Wall clock time and date at job start Sun Mar 29 2020 21:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00212 * 2 1 4 4 C 1.50697 * 109.47189 * 66.04640 * 3 2 1 5 5 H 1.08005 * 120.00066 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00161 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00071 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00080 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47080 * 90.00246 * 8 6 4 10 10 H 1.48496 * 109.47446 * 210.00056 * 8 6 4 11 11 H 1.48500 * 109.47317 * 330.00622 * 8 6 4 12 12 C 1.46904 * 110.99911 * 236.04496 * 2 1 3 13 13 C 1.50693 * 109.46858 * 293.95728 * 12 2 1 14 14 C 1.38128 * 123.88918 * 95.00501 * 13 12 2 15 15 N 1.30419 * 112.22772 * 180.22870 * 14 13 12 16 16 S 1.55998 * 108.39853 * 359.59276 * 15 14 13 17 17 N 1.30422 * 123.88402 * 274.95383 * 13 12 2 18 18 H 1.08995 * 109.47433 * 183.95306 * 1 2 3 19 19 H 1.09000 * 109.46840 * 303.95837 * 1 2 3 20 20 H 1.09000 * 109.46784 * 63.95057 * 1 2 3 21 21 H 1.08996 * 109.47254 * 186.04435 * 3 2 1 22 22 H 1.09001 * 109.47093 * 306.04428 * 3 2 1 23 23 H 0.96997 * 119.99688 * 179.97438 * 7 6 4 24 24 H 1.08998 * 109.47002 * 173.95750 * 12 2 1 25 25 H 1.08995 * 109.46867 * 53.95802 * 12 2 1 26 26 H 1.08002 * 123.88062 * 359.95324 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0740 1.5115 2.0485 6 6 2.0269 3.3494 1.5285 7 7 1.7145 3.9390 2.6618 8 14 3.0001 4.2761 0.2310 9 1 2.0635 4.9798 -0.6816 10 1 3.8864 5.2678 0.8913 11 1 3.8240 3.3175 -0.5484 12 6 1.9954 -0.7660 -1.1376 13 6 1.6368 -2.2204 -0.9728 14 6 0.5255 -2.8091 -1.5440 15 7 0.4323 -4.0762 -1.2497 16 16 1.6461 -4.4632 -0.3495 17 7 2.3407 -3.0683 -0.2753 18 1 -0.3634 -1.0251 0.0708 19 1 -0.3633 0.5740 0.8524 20 1 -0.3633 0.4513 -0.9233 21 1 3.0797 1.3444 -0.1082 22 1 1.5612 1.9273 -0.8309 23 1 1.9891 4.8550 2.8238 24 1 3.0797 -0.6612 -1.1756 25 1 1.5611 -0.3872 -2.0628 26 1 -0.1869 -2.2798 -2.1595 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399913959.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:50 Heat of formation + Delta-G solvation = 67.749114 kcal Electronic energy + Delta-G solvation = -11923.625832 eV Core-core repulsion = 9743.911499 eV Total energy + Delta-G solvation = -2179.714333 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.72605 -36.63877 -33.33085 -32.44818 -29.18091 -27.43870 -25.72587 -23.30518 -20.85831 -20.08642 -19.15381 -16.89577 -15.83597 -15.57027 -14.71127 -14.45743 -14.16568 -13.74124 -12.63839 -12.41211 -12.23293 -11.63407 -11.29891 -11.15880 -11.00031 -10.71759 -10.68734 -10.67988 -10.25620 -9.88037 -9.33715 -8.85929 -8.59899 -7.49968 -6.07152 -4.05113 0.84725 1.69737 1.92260 2.25394 3.26580 3.34899 3.35934 4.39794 4.56873 4.88787 5.11718 5.25983 5.29696 5.52987 5.80516 5.98079 5.99871 6.15767 6.60532 6.76752 6.82704 6.92554 7.52874 7.78763 7.93332 8.61102 9.01120 9.53574 11.05944 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.066470 B = 0.006820 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.144506 B = 4104.385418 C = 4158.023047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.524 5.524 3 C 0.164 3.836 4 C -0.510 4.510 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.876 3.124 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.132 3.868 13 C 0.082 3.918 14 C 0.037 3.963 15 N -0.576 5.576 16 S 0.642 5.358 17 N -0.547 5.547 18 H 0.044 0.956 19 H 0.083 0.917 20 H 0.017 0.983 21 H 0.032 0.968 22 H -0.012 1.012 23 H 0.264 0.736 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 -12.746 -9.520 15.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.249 5.249 3 C 0.038 3.962 4 C -0.549 4.549 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.703 3.297 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.191 1.191 12 C -0.002 4.002 13 C -0.093 4.093 14 C -0.159 4.159 15 N -0.417 5.417 16 S 0.685 5.315 17 N -0.390 5.390 18 H 0.063 0.937 19 H 0.102 0.898 20 H 0.036 0.964 21 H 0.049 0.951 22 H 0.006 0.994 23 H 0.074 0.926 24 H 0.110 0.890 25 H 0.070 0.930 26 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.063 -14.712 -8.102 16.796 hybrid contribution -0.310 2.644 -2.035 3.351 sum -0.373 -12.068 -10.137 15.765 Atomic orbital electron populations 1.22323 0.88011 0.99867 1.01338 1.61907 1.07606 1.16614 1.38762 1.20223 0.95426 0.83211 0.97364 1.20998 1.35771 0.97197 1.00897 0.90129 1.24893 0.95712 0.97321 0.95369 1.69891 1.46780 1.13271 1.23887 0.86853 0.80630 0.80082 0.82116 1.20313 1.21130 1.19099 1.20572 1.01652 0.84205 0.93726 1.22593 0.92327 0.98961 0.95438 1.23750 0.99709 0.88964 1.03473 1.72358 1.29104 1.19519 1.20743 1.78973 1.03502 1.14513 1.34476 1.72299 1.34881 1.07693 1.24080 0.93726 0.89798 0.96444 0.95051 0.99431 0.92608 0.89028 0.93030 0.78381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.10 60.07 0.55 1.16 15 2 N -0.52 -10.78 4.74 -245.83 -1.17 -11.95 15 3 C 0.16 3.86 3.79 -4.98 -0.02 3.84 15 4 C -0.51 -14.34 9.01 -34.44 -0.31 -14.65 15 5 H 0.08 2.48 7.37 -52.48 -0.39 2.10 15 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 15 7 N -0.90 -27.37 13.96 55.43 0.77 -26.59 15 8 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 15 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 11 H -0.27 -6.12 6.54 56.52 0.37 -5.75 15 12 C 0.13 2.16 5.46 -4.98 -0.03 2.14 15 13 C 0.08 1.27 5.64 -83.23 -0.47 0.80 15 14 C 0.04 0.49 10.31 -18.19 -0.19 0.30 15 15 N -0.58 -7.90 11.45 18.95 0.22 -7.68 15 16 S 0.64 8.11 23.71 -107.50 -2.55 5.56 15 17 N -0.55 -8.81 11.45 22.71 0.26 -8.55 15 18 H 0.04 0.74 6.50 -51.93 -0.34 0.40 15 19 H 0.08 1.76 6.76 -51.93 -0.35 1.41 15 20 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 15 21 H 0.03 0.75 6.99 -51.93 -0.36 0.39 15 22 H -0.01 -0.27 7.55 -51.93 -0.39 -0.67 15 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 24 H 0.09 1.52 7.93 -51.93 -0.41 1.11 15 25 H 0.05 0.72 8.11 -51.93 -0.42 0.30 15 26 H 0.20 2.05 8.06 -52.49 -0.42 1.63 15 LS Contribution 238.03 15.07 3.59 3.59 Total: -1.00 -31.60 238.03 -6.78 -38.38 By element: Atomic # 1 Polarization: -1.97 SS G_CDS: -2.67 Total: -4.64 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -0.56 Total: -4.53 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.08 Total: -54.77 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Atomic # 16 Polarization: 8.11 SS G_CDS: -2.55 Total: 5.56 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.60 -6.78 -38.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399913959.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.130 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds