Wall clock time and date at job start Sun Mar 29 2020 21:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00212 * 2 1 4 4 C 1.50697 * 109.47189 * 66.04640 * 3 2 1 5 5 H 1.08005 * 120.00066 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00161 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00071 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00080 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47080 * 90.00246 * 8 6 4 10 10 H 1.48496 * 109.47446 * 210.00056 * 8 6 4 11 11 H 1.48500 * 109.47317 * 330.00622 * 8 6 4 12 12 C 1.46904 * 110.99911 * 236.04496 * 2 1 3 13 13 C 1.50693 * 109.46858 * 293.95728 * 12 2 1 14 14 C 1.38128 * 123.88918 * 95.00501 * 13 12 2 15 15 N 1.30419 * 112.22772 * 180.22870 * 14 13 12 16 16 S 1.55998 * 108.39853 * 359.59276 * 15 14 13 17 17 N 1.30422 * 123.88402 * 274.95383 * 13 12 2 18 18 H 1.08995 * 109.47433 * 183.95306 * 1 2 3 19 19 H 1.09000 * 109.46840 * 303.95837 * 1 2 3 20 20 H 1.09000 * 109.46784 * 63.95057 * 1 2 3 21 21 H 1.08996 * 109.47254 * 186.04435 * 3 2 1 22 22 H 1.09001 * 109.47093 * 306.04428 * 3 2 1 23 23 H 0.96997 * 119.99688 * 179.97438 * 7 6 4 24 24 H 1.08998 * 109.47002 * 173.95750 * 12 2 1 25 25 H 1.08995 * 109.46867 * 53.95802 * 12 2 1 26 26 H 1.08002 * 123.88062 * 359.95324 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0740 1.5115 2.0485 6 6 2.0269 3.3494 1.5285 7 7 1.7145 3.9390 2.6618 8 14 3.0001 4.2761 0.2310 9 1 2.0635 4.9798 -0.6816 10 1 3.8864 5.2678 0.8913 11 1 3.8240 3.3175 -0.5484 12 6 1.9954 -0.7660 -1.1376 13 6 1.6368 -2.2204 -0.9728 14 6 0.5255 -2.8091 -1.5440 15 7 0.4323 -4.0762 -1.2497 16 16 1.6461 -4.4632 -0.3495 17 7 2.3407 -3.0683 -0.2753 18 1 -0.3634 -1.0251 0.0708 19 1 -0.3633 0.5740 0.8524 20 1 -0.3633 0.4513 -0.9233 21 1 3.0797 1.3444 -0.1082 22 1 1.5612 1.9273 -0.8309 23 1 1.9891 4.8550 2.8238 24 1 3.0797 -0.6612 -1.1756 25 1 1.5611 -0.3872 -2.0628 26 1 -0.1869 -2.2798 -2.1595 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399913959.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:50 Heat of formation + Delta-G solvation = 43.022983 kcal Electronic energy + Delta-G solvation = -11924.698037 eV Core-core repulsion = 9743.911499 eV Total energy + Delta-G solvation = -2180.786538 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.81864 -38.18541 -34.76977 -34.24376 -30.80061 -29.02899 -27.12708 -24.82994 -22.40211 -21.44316 -20.21124 -18.96874 -17.11321 -16.73371 -16.34399 -15.96793 -15.70535 -15.23167 -14.48018 -13.82335 -13.73391 -13.17477 -12.93654 -12.62457 -12.44424 -12.26293 -11.90773 -11.80019 -11.77593 -11.69419 -11.43328 -10.76384 -9.90159 -9.02787 -8.25544 -6.29573 -0.22838 0.66413 0.89092 1.16321 1.38571 1.41491 1.51950 2.37942 3.08007 3.29934 3.62762 3.99202 4.13848 4.42884 4.57490 4.64922 4.71313 4.81561 4.95915 5.03454 5.21017 5.55147 5.76026 5.95909 6.33496 6.62943 6.76764 7.33958 8.91343 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.066470 B = 0.006820 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.144506 B = 4104.385418 C = 4158.023047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.550 5.550 3 C 0.174 3.826 4 C -0.518 4.518 5 H 0.033 0.967 6 C 0.005 3.995 7 N -0.951 5.951 8 Si 0.951 3.049 9 H -0.264 1.264 10 H -0.286 1.286 11 H -0.244 1.244 12 C 0.134 3.866 13 C 0.067 3.933 14 C 0.043 3.957 15 N -0.590 5.590 16 S 0.694 5.306 17 N -0.588 5.588 18 H 0.064 0.936 19 H 0.046 0.954 20 H 0.041 0.959 21 H 0.032 0.968 22 H 0.002 0.998 23 H 0.266 0.734 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.507 -13.398 -11.999 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.276 5.276 3 C 0.047 3.953 4 C -0.556 4.556 5 H 0.051 0.949 6 C -0.191 4.191 7 N -0.592 5.592 8 Si 0.774 3.226 9 H -0.189 1.189 10 H -0.212 1.212 11 H -0.168 1.168 12 C 0.002 3.998 13 C -0.108 4.108 14 C -0.152 4.152 15 N -0.432 5.432 16 S 0.738 5.262 17 N -0.433 5.433 18 H 0.082 0.918 19 H 0.064 0.936 20 H 0.059 0.941 21 H 0.050 0.950 22 H 0.020 0.980 23 H 0.075 0.925 24 H 0.104 0.896 25 H 0.102 0.898 26 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 0.196 -15.394 -10.603 18.693 hybrid contribution -0.442 2.681 -1.170 2.959 sum -0.246 -12.713 -11.773 17.329 Atomic orbital electron populations 1.22212 0.87084 1.00643 1.00816 1.61708 1.08691 1.15214 1.41937 1.19957 0.95491 0.84902 0.94963 1.21266 1.34884 0.97465 1.01999 0.94891 1.25893 0.96965 0.98441 0.97848 1.70064 1.48699 1.13886 1.26568 0.85662 0.79191 0.78663 0.79093 1.18874 1.21190 1.16755 1.20572 1.01432 0.84447 0.93391 1.22543 0.93293 0.98508 0.96419 1.24035 0.99307 0.88730 1.03087 1.72363 1.29651 1.19860 1.21318 1.78720 1.02156 1.12315 1.32973 1.72134 1.36588 1.09543 1.25004 0.91767 0.93551 0.94078 0.94982 0.98029 0.92484 0.89557 0.89755 0.75492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.46 9.10 127.69 1.16 2.62 15 2 N -0.55 -22.00 4.74 -931.68 -4.42 -26.42 15 3 C 0.17 7.99 3.79 85.56 0.32 8.31 15 4 C -0.52 -29.71 9.01 25.60 0.23 -29.48 15 5 H 0.03 2.14 7.37 -2.91 -0.02 2.12 15 6 C 0.01 0.31 5.47 84.65 0.46 0.78 15 7 N -0.95 -59.55 13.96 21.45 0.30 -59.25 15 8 Si 0.95 42.96 27.47 68.60 1.88 44.84 15 9 H -0.26 -11.30 7.11 99.48 0.71 -10.59 15 10 H -0.29 -12.86 7.11 99.48 0.71 -12.15 15 11 H -0.24 -10.08 6.54 99.48 0.65 -9.43 15 12 C 0.13 4.06 5.46 85.55 0.47 4.53 15 13 C 0.07 1.91 5.64 42.74 0.24 2.16 15 14 C 0.04 1.00 10.31 84.88 0.88 1.88 15 15 N -0.59 -14.56 11.45 -93.96 -1.08 -15.63 15 16 S 0.69 16.12 23.71 -56.49 -1.34 14.78 15 17 N -0.59 -18.00 11.45 -82.08 -0.94 -18.94 15 18 H 0.06 2.01 6.50 -2.39 -0.02 2.00 15 19 H 0.05 1.99 6.76 -2.39 -0.02 1.97 15 20 H 0.04 1.26 8.14 -2.39 -0.02 1.24 15 21 H 0.03 1.47 6.99 -2.39 -0.02 1.45 15 22 H 0.00 0.09 7.55 -2.39 -0.02 0.07 15 23 H 0.27 15.52 8.31 -92.71 -0.77 14.75 15 24 H 0.09 2.69 7.93 -2.39 -0.02 2.67 15 25 H 0.08 2.01 8.11 -2.39 -0.02 1.99 15 26 H 0.23 3.74 8.06 -2.91 -0.02 3.71 15 Total: -1.00 -69.33 238.03 -0.70 -70.03 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: 1.13 Total: -0.21 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 3.76 Total: -9.21 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -6.14 Total: -120.24 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.88 Total: 44.84 kcal Atomic # 16 Polarization: 16.12 SS G_CDS: -1.34 Total: 14.78 kcal Total: -69.33 -0.70 -70.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399913959.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.053 kcal (2) G-P(sol) polarization free energy of solvation -69.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds