Wall clock time and date at job start Sun Mar 29 2020 21:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47208 * 2 1 4 4 C 1.50701 * 109.46882 * 240.00340 * 2 1 3 5 5 H 1.07997 * 120.00014 * 239.99804 * 4 2 1 6 6 C 1.37879 * 120.00095 * 59.99872 * 4 2 1 7 7 N 1.31512 * 119.99978 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99886 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47424 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47089 * 120.00057 * 8 6 4 11 11 H 1.48504 * 109.47116 * 239.99641 * 8 6 4 12 12 N 1.46892 * 109.47406 * 120.00014 * 2 1 3 13 13 C 1.46895 * 111.00535 * 274.99963 * 12 2 1 14 14 C 1.50696 * 109.47683 * 179.97438 * 13 12 2 15 15 C 1.35343 * 127.92304 * 89.99349 * 14 13 12 16 16 N 1.31744 * 112.46438 * 179.71527 * 15 14 13 17 17 N 1.27575 * 118.27592 * 0.27528 * 16 15 14 18 18 S 1.56509 * 109.22069 * 359.97438 * 17 16 15 19 19 H 1.08993 * 109.47185 * 59.99484 * 1 2 3 20 20 H 1.08994 * 109.47388 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46583 * 300.00031 * 1 2 3 22 22 H 0.97001 * 119.99977 * 180.02562 * 7 6 4 23 23 H 1.00902 * 111.00456 * 151.04273 * 12 2 1 24 24 H 1.09006 * 109.46680 * 59.99751 * 13 12 2 25 25 H 1.09000 * 109.46898 * 300.00078 * 13 12 2 26 26 H 1.08002 * 123.77006 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 3.1463 -2.2869 -3.6040 10 1 1.1659 -1.5865 -4.8161 11 1 3.1464 -0.1872 -4.8166 12 7 2.0198 -0.6924 1.1993 13 6 2.0826 0.2225 2.3468 14 6 2.5875 -0.5219 3.5559 15 6 3.8691 -0.6753 3.9630 16 7 3.9643 -1.3822 5.0707 17 7 2.8906 -1.8223 5.6008 18 16 1.6667 -1.3734 4.7347 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 0.7088 1.1615 -3.4844 23 1 2.9174 -1.1205 1.0287 24 1 1.0872 0.6162 2.5525 25 1 2.7590 1.0461 2.1181 26 1 4.7187 -0.2609 3.4406 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400290932.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:49 Heat of formation + Delta-G solvation = 65.708524 kcal Electronic energy + Delta-G solvation = -11740.687989 eV Core-core repulsion = 9560.885169 eV Total energy + Delta-G solvation = -2179.802819 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.59346 -36.33820 -33.35496 -31.56545 -28.96223 -26.80764 -25.34733 -23.85528 -20.85508 -19.94163 -18.92720 -16.72455 -15.53806 -15.20965 -14.99091 -14.34769 -13.74094 -13.67235 -12.70787 -12.42149 -12.02718 -11.39853 -11.29348 -10.98686 -10.86127 -10.41763 -10.28601 -10.20276 -9.93203 -9.72896 -9.43233 -8.93923 -8.58162 -7.53601 -6.12813 -4.19802 0.40378 1.29604 1.90153 2.39999 3.23182 3.31681 3.35631 4.31842 4.37455 4.86791 5.03699 5.18534 5.36646 5.74675 5.84895 5.95733 6.72341 6.99335 7.06619 7.31978 7.66795 7.74014 7.88423 8.12263 8.18894 8.46476 8.88672 9.46871 10.93498 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.060162 B = 0.006612 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.299260 B = 4233.884958 C = 4456.314620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.212 3.788 3 H 0.005 0.995 4 C -0.521 4.521 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.683 5.683 13 C 0.134 3.866 14 C -0.225 4.225 15 C -0.016 4.016 16 N -0.246 5.246 17 N -0.310 5.310 18 S 0.431 5.569 19 H 0.083 0.917 20 H 0.033 0.967 21 H 0.005 0.995 22 H 0.262 0.738 23 H 0.335 0.665 24 H 0.085 0.915 25 H 0.050 0.950 26 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 -0.478 9.633 9.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.104 3.896 3 H 0.023 0.977 4 C -0.559 4.559 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.316 5.316 13 C 0.002 3.998 14 C -0.363 4.363 15 C -0.180 4.180 16 N -0.112 5.112 17 N -0.289 5.289 18 S 0.566 5.434 19 H 0.101 0.899 20 H 0.052 0.948 21 H 0.024 0.976 22 H 0.072 0.928 23 H 0.153 0.847 24 H 0.103 0.897 25 H 0.068 0.932 26 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -0.367 -1.648 11.196 11.323 hybrid contribution 1.908 0.935 -2.341 3.161 sum 1.541 -0.713 8.855 9.017 Atomic orbital electron populations 1.21744 0.97594 0.99588 0.99566 1.19171 0.92803 0.92495 0.85082 0.97712 1.21251 1.31736 1.12677 0.90270 0.92073 1.24908 0.94931 0.94951 0.99105 1.69893 1.36459 1.22795 1.23564 0.86445 0.78653 0.79620 0.82716 1.19719 1.20900 1.21040 1.60882 1.32554 1.32456 1.05664 1.20291 1.00432 0.92719 0.86345 1.27499 0.97217 1.06170 1.05461 1.23716 0.98174 1.01314 0.94822 1.71245 1.19728 1.10543 1.09639 1.78736 0.99405 1.24668 1.26108 1.81455 1.19946 1.33407 1.08640 0.89864 0.94762 0.97609 0.92843 0.84716 0.89694 0.93239 0.78573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.19 37.16 0.34 -2.61 15 2 C 0.21 4.99 2.60 -68.87 -0.18 4.81 15 3 H 0.01 0.13 7.80 -51.93 -0.40 -0.27 15 4 C -0.52 -13.61 8.59 -34.44 -0.30 -13.91 15 5 H 0.06 1.59 7.62 -52.49 -0.40 1.19 15 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 15 7 N -0.89 -24.39 11.32 55.43 0.63 -23.76 15 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 15 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 12 N -0.68 -13.31 6.29 -109.23 -0.69 -14.00 15 13 C 0.13 2.12 6.07 -4.98 -0.03 2.09 15 14 C -0.22 -3.19 6.20 -35.34 -0.22 -3.41 15 15 C -0.02 -0.22 11.53 -18.62 -0.21 -0.43 15 16 N -0.25 -3.87 11.68 29.33 0.34 -3.53 15 17 N -0.31 -4.79 12.54 60.35 0.76 -4.03 15 18 S 0.43 5.68 23.40 -107.50 -2.52 3.17 15 19 H 0.08 2.13 6.07 -51.93 -0.32 1.82 15 20 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.00 0.10 7.45 -51.93 -0.39 -0.28 15 22 H 0.26 6.84 8.31 -40.82 -0.34 6.50 15 23 H 0.34 6.47 8.22 -39.29 -0.32 6.14 15 24 H 0.08 1.31 7.44 -51.93 -0.39 0.92 15 25 H 0.05 0.76 8.06 -51.93 -0.42 0.34 15 26 H 0.20 2.23 8.06 -52.49 -0.42 1.81 15 LS Contribution 242.74 15.07 3.66 3.66 Total: -1.00 -28.07 242.74 -6.14 -34.22 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -2.61 Total: 0.56 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -0.69 Total: -11.87 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 1.04 Total: -45.31 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 5.68 SS G_CDS: -2.52 Total: 3.17 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.07 -6.14 -34.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400290932.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.925 kcal (2) G-P(sol) polarization free energy of solvation -28.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds