Wall clock time and date at job start Sun Mar 29 2020 21:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47208 * 2 1 4 4 C 1.50701 * 109.46882 * 240.00340 * 2 1 3 5 5 H 1.07997 * 120.00014 * 239.99804 * 4 2 1 6 6 C 1.37879 * 120.00095 * 59.99872 * 4 2 1 7 7 N 1.31512 * 119.99978 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99886 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47424 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47089 * 120.00057 * 8 6 4 11 11 H 1.48504 * 109.47116 * 239.99641 * 8 6 4 12 12 N 1.46892 * 109.47406 * 120.00014 * 2 1 3 13 13 C 1.46895 * 111.00535 * 274.99963 * 12 2 1 14 14 C 1.50696 * 109.47683 * 179.97438 * 13 12 2 15 15 C 1.35343 * 127.92304 * 89.99349 * 14 13 12 16 16 N 1.31744 * 112.46438 * 179.71527 * 15 14 13 17 17 N 1.27575 * 118.27592 * 0.27528 * 16 15 14 18 18 S 1.56509 * 109.22069 * 359.97438 * 17 16 15 19 19 H 1.08993 * 109.47185 * 59.99484 * 1 2 3 20 20 H 1.08994 * 109.47388 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46583 * 300.00031 * 1 2 3 22 22 H 0.97001 * 119.99977 * 180.02562 * 7 6 4 23 23 H 1.00902 * 111.00456 * 151.04273 * 12 2 1 24 24 H 1.09006 * 109.46680 * 59.99751 * 13 12 2 25 25 H 1.09000 * 109.46898 * 300.00078 * 13 12 2 26 26 H 1.08002 * 123.77006 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 3.1463 -2.2869 -3.6040 10 1 1.1659 -1.5865 -4.8161 11 1 3.1464 -0.1872 -4.8166 12 7 2.0198 -0.6924 1.1993 13 6 2.0826 0.2225 2.3468 14 6 2.5875 -0.5219 3.5559 15 6 3.8691 -0.6753 3.9630 16 7 3.9643 -1.3822 5.0707 17 7 2.8906 -1.8223 5.6008 18 16 1.6667 -1.3734 4.7347 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 0.7088 1.1615 -3.4844 23 1 2.9174 -1.1205 1.0287 24 1 1.0872 0.6162 2.5525 25 1 2.7590 1.0461 2.1181 26 1 4.7187 -0.2609 3.4406 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400290932.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:49 Heat of formation + Delta-G solvation = 46.233353 kcal Electronic energy + Delta-G solvation = -11741.532495 eV Core-core repulsion = 9560.885169 eV Total energy + Delta-G solvation = -2180.647326 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.72781 -37.94801 -35.03735 -33.10022 -30.51379 -28.20338 -27.25323 -25.21823 -22.09380 -21.67901 -20.05550 -18.57605 -16.97820 -16.61731 -16.36299 -15.95049 -15.35073 -14.96814 -14.36632 -13.87942 -13.42439 -13.07602 -12.83408 -12.73623 -12.49212 -12.20740 -12.09365 -11.99191 -11.05627 -10.94233 -10.83138 -10.60456 -10.52508 -9.13978 -8.13006 -6.26100 -0.73211 0.21214 0.79573 1.28342 1.42223 1.45627 1.55801 2.42518 3.16784 3.25500 3.58166 3.89468 3.95525 4.59636 4.64226 4.75914 4.89041 5.11722 5.22915 5.48029 5.67224 5.87282 6.24807 6.40515 6.70928 6.77118 6.96192 7.44308 8.92466 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.060162 B = 0.006612 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.299260 B = 4233.884958 C = 4456.314620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.216 3.784 3 H -0.018 1.018 4 C -0.536 4.536 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.958 3.042 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.281 1.281 12 N -0.683 5.683 13 C 0.140 3.860 14 C -0.240 4.240 15 C -0.008 4.008 16 N -0.270 5.270 17 N -0.335 5.335 18 S 0.488 5.512 19 H 0.057 0.943 20 H 0.028 0.972 21 H 0.029 0.971 22 H 0.262 0.738 23 H 0.336 0.664 24 H 0.090 0.910 25 H 0.056 0.944 26 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.072 -0.869 9.965 10.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.108 3.892 3 H 0.000 1.000 4 C -0.575 4.575 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.784 3.216 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.207 1.207 12 N -0.315 5.315 13 C 0.008 3.992 14 C -0.379 4.379 15 C -0.173 4.173 16 N -0.135 5.135 17 N -0.314 5.314 18 S 0.622 5.378 19 H 0.075 0.925 20 H 0.047 0.953 21 H 0.048 0.952 22 H 0.072 0.928 23 H 0.154 0.846 24 H 0.109 0.891 25 H 0.074 0.926 26 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.173 -2.049 11.555 11.737 hybrid contribution 1.811 1.062 -2.380 3.174 sum 1.639 -0.987 9.176 9.373 Atomic orbital electron populations 1.21581 0.97446 0.99072 0.99484 1.18950 0.92899 0.91244 0.86110 1.00030 1.21592 1.31642 1.12680 0.91580 0.92368 1.25639 0.95191 0.95632 1.01813 1.70006 1.37372 1.23915 1.24120 0.85508 0.78062 0.78624 0.79409 1.19272 1.20812 1.20741 1.60742 1.32708 1.32900 1.05148 1.20209 1.01134 0.92379 0.85444 1.27338 0.97803 1.07167 1.05582 1.24054 0.98851 1.00245 0.94144 1.71293 1.20168 1.11560 1.10489 1.78573 1.00233 1.25400 1.27226 1.81232 1.18175 1.31424 1.06981 0.92464 0.95321 0.95166 0.92832 0.84621 0.89126 0.92585 0.76487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 9.19 71.98 0.66 -4.73 15 2 C 0.22 10.08 2.60 44.17 0.11 10.20 15 3 H -0.02 -0.91 7.80 -2.39 -0.02 -0.92 15 4 C -0.54 -27.83 8.59 25.60 0.22 -27.61 15 5 H 0.06 2.98 7.62 -2.91 -0.02 2.96 15 6 C 0.02 0.89 5.30 84.66 0.45 1.34 15 7 N -0.91 -50.33 11.32 21.45 0.24 -50.09 15 8 Si 0.96 41.96 29.54 68.60 2.03 43.98 15 9 H -0.27 -11.46 7.11 99.48 0.71 -10.75 15 10 H -0.28 -12.24 7.11 99.48 0.71 -11.54 15 11 H -0.28 -12.12 7.11 99.48 0.71 -11.42 15 12 N -0.68 -25.69 6.29 -499.48 -3.14 -28.83 15 13 C 0.14 4.15 6.07 85.56 0.52 4.67 15 14 C -0.24 -6.31 6.20 25.02 0.16 -6.15 15 15 C -0.01 -0.20 11.53 84.04 0.97 0.77 15 16 N -0.27 -8.08 11.68 -61.13 -0.71 -8.79 15 17 N -0.33 -9.79 12.54 37.02 0.46 -9.33 15 18 S 0.49 11.79 23.40 -56.49 -1.32 10.47 15 19 H 0.06 2.93 6.07 -2.39 -0.01 2.92 15 20 H 0.03 1.30 8.14 -2.39 -0.02 1.28 15 21 H 0.03 1.19 7.45 -2.39 -0.02 1.17 15 22 H 0.26 13.74 8.31 -92.71 -0.77 12.97 15 23 H 0.34 12.53 8.22 -89.69 -0.74 11.80 15 24 H 0.09 2.59 7.44 -2.38 -0.02 2.57 15 25 H 0.06 1.62 8.06 -2.39 -0.02 1.60 15 26 H 0.22 4.45 8.06 -2.91 -0.02 4.42 15 Total: -1.00 -58.15 242.74 1.11 -57.04 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 0.46 Total: 7.07 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 3.09 Total: -21.52 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -3.15 Total: -97.04 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: 11.79 SS G_CDS: -1.32 Total: 10.47 kcal Total: -58.15 1.11 -57.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400290932.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.277 kcal (2) G-P(sol) polarization free energy of solvation -58.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds