Wall clock time and date at job start Sun Mar 29 2020 21:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31743 * 123.76330 * 2 1 4 4 N 1.27572 * 118.27412 * 180.02562 * 3 2 1 5 5 S 1.56512 * 109.22389 * 0.02562 * 4 3 2 6 6 C 1.35339 * 123.77172 * 180.02562 * 2 1 3 7 7 C 1.50698 * 127.92290 * 0.23370 * 6 2 1 8 8 N 1.46501 * 109.47368 * 89.70682 * 7 6 2 9 9 C 1.46493 * 119.99832 * 270.00483 * 8 7 6 10 10 C 1.36929 * 119.99771 * 89.99822 * 8 7 6 11 11 H 1.08009 * 120.00474 * 22.15468 * 10 8 7 12 12 C 1.38814 * 120.00026 * 202.15452 * 10 8 7 13 13 N 1.31621 * 119.99868 * 11.30611 * 12 10 8 14 14 Si 1.86803 * 120.00227 * 191.31410 * 12 10 8 15 15 H 1.48508 * 109.47095 * 89.99473 * 14 12 10 16 16 H 1.48497 * 109.47151 * 209.99681 * 14 12 10 17 17 H 1.48502 * 109.47030 * 329.99718 * 14 12 10 18 18 H 1.09000 * 109.46882 * 269.97053 * 1 2 3 19 19 H 1.08998 * 109.47902 * 29.97139 * 1 2 3 20 20 H 1.09005 * 109.47187 * 149.97380 * 1 2 3 21 21 H 1.08997 * 109.47361 * 209.70949 * 7 6 2 22 22 H 1.09002 * 109.47296 * 329.70651 * 7 6 2 23 23 H 1.08995 * 109.47750 * 94.14212 * 9 8 7 24 24 H 1.09001 * 109.47060 * 214.14103 * 9 8 7 25 25 H 1.09004 * 109.47150 * 334.14422 * 9 8 7 26 26 H 0.97003 * 119.99797 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2391 1.0952 0.0000 4 7 3.5090 0.9732 -0.0005 5 16 3.8806 -0.5472 -0.0017 6 6 2.2593 -1.1250 -0.0005 7 6 1.7860 -2.5557 -0.0060 8 7 1.6305 -3.0134 -1.3890 9 6 0.3484 -2.8437 -2.0769 10 6 2.6838 -3.5997 -2.0385 11 1 3.4858 -4.0488 -1.4713 12 6 2.7209 -3.6169 -3.4260 13 7 1.8718 -2.8853 -4.1162 14 14 3.9756 -4.6786 -4.3138 15 1 3.3992 -6.0249 -4.5601 16 1 4.3296 -4.0470 -5.6103 17 1 5.1954 -4.8079 -3.4768 18 1 -0.3633 -0.0005 1.0277 19 1 -0.3635 0.8902 -0.5134 20 1 -0.3634 -0.8898 -0.5143 21 1 2.5175 -3.1824 0.5041 22 1 0.8276 -2.6234 0.5090 23 1 0.3618 -1.9145 -2.6465 24 1 0.1854 -3.6824 -2.7538 25 1 -0.4562 -2.8079 -1.3423 26 1 1.8975 -2.8976 -5.0858 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590602380.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:47 Heat of formation + Delta-G solvation = 67.068288 kcal Electronic energy + Delta-G solvation = -12325.286970 eV Core-core repulsion = 10145.543114 eV Total energy + Delta-G solvation = -2179.743855 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.66238 -37.77510 -34.62942 -32.92708 -30.13380 -28.02797 -27.64543 -26.23239 -23.30871 -21.00421 -19.44030 -18.66421 -17.09297 -16.68767 -15.99708 -15.44487 -15.14478 -14.74630 -14.11424 -13.76071 -13.65019 -13.15976 -13.02293 -12.82205 -12.61249 -12.44271 -12.04820 -12.00980 -11.75875 -10.95511 -10.69865 -10.44233 -10.28694 -8.94378 -7.90775 -5.36363 -0.55281 0.44682 0.96087 1.38810 1.48550 1.49679 1.57014 2.47882 3.25971 3.35428 3.70412 3.98034 4.15308 4.57777 4.73098 4.78425 4.83184 4.87194 4.96585 5.23497 5.37859 5.61155 5.73430 6.24530 6.94974 7.06595 7.75349 8.17705 9.11126 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.036513 B = 0.011441 C = 0.009913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.671708 B = 2446.736495 C = 2823.940772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.006 4.006 3 N -0.273 5.273 4 N -0.352 5.352 5 S 0.424 5.576 6 C -0.244 4.244 7 C 0.217 3.783 8 N -0.594 5.594 9 C 0.173 3.827 10 C -0.261 4.261 11 H 0.084 0.916 12 C -0.047 4.047 13 N -0.931 5.931 14 Si 0.965 3.035 15 H -0.282 1.282 16 H -0.302 1.302 17 H -0.262 1.262 18 H 0.102 0.898 19 H 0.074 0.926 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.099 0.901 23 H -0.001 1.001 24 H 0.024 0.976 25 H 0.044 0.956 26 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.227 -0.375 8.877 8.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.152 4.152 3 N -0.139 5.139 4 N -0.330 5.330 5 S 0.560 5.440 6 C -0.386 4.386 7 C 0.087 3.913 8 N -0.315 5.315 9 C 0.028 3.972 10 C -0.392 4.392 11 H 0.102 0.898 12 C -0.244 4.244 13 N -0.576 5.576 14 Si 0.793 3.207 15 H -0.209 1.209 16 H -0.229 1.229 17 H -0.187 1.187 18 H 0.120 0.880 19 H 0.092 0.908 20 H 0.100 0.900 21 H 0.099 0.901 22 H 0.117 0.883 23 H 0.018 0.982 24 H 0.043 0.957 25 H 0.062 0.938 26 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.354 0.754 8.705 8.745 hybrid contribution -0.672 -0.656 -1.216 1.537 sum -0.319 0.098 7.489 7.497 Atomic orbital electron populations 1.20329 0.83627 1.03851 1.04332 1.22527 1.01304 0.86530 1.04820 1.71062 0.97417 1.29529 1.15893 1.78508 1.10563 1.17174 1.26781 1.81037 1.11375 0.99815 1.51808 1.28850 0.98257 1.05528 1.05970 1.19761 1.01177 0.83525 0.86799 1.44520 1.09784 1.65642 1.11526 1.20698 0.84345 0.98483 0.93643 1.19689 1.02208 1.27967 0.89339 0.89784 1.25856 1.00416 1.00153 0.97955 1.70243 1.39967 1.41668 1.05761 0.85296 0.79491 0.78255 0.77677 1.20903 1.22863 1.18657 0.88003 0.90756 0.90021 0.90065 0.88309 0.98239 0.95728 0.93754 0.94188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 10.02 71.23 0.71 -1.03 15 2 C -0.01 -0.20 6.88 41.90 0.29 0.08 15 3 N -0.27 -11.16 11.68 -51.25 -0.60 -11.76 15 4 N -0.35 -14.33 12.54 37.02 0.46 -13.86 15 5 S 0.42 15.31 23.40 -56.49 -1.32 13.99 15 6 C -0.24 -8.93 6.25 25.02 0.16 -8.78 15 7 C 0.22 7.51 5.81 85.63 0.50 8.00 15 8 N -0.59 -26.43 2.91 -731.33 -2.13 -28.56 15 9 C 0.17 7.69 8.09 127.77 1.03 8.73 15 10 C -0.26 -12.91 9.68 84.04 0.81 -12.10 15 11 H 0.08 3.94 7.84 -2.91 -0.02 3.91 15 12 C -0.05 -2.48 5.13 84.86 0.44 -2.05 15 13 N -0.93 -52.62 10.57 21.65 0.23 -52.39 15 14 Si 0.96 42.59 29.57 68.60 2.03 44.62 15 15 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 16 H -0.30 -13.81 7.11 99.48 0.71 -13.11 15 17 H -0.26 -10.86 7.11 99.48 0.71 -10.16 15 18 H 0.10 2.24 8.14 -2.39 -0.02 2.22 15 19 H 0.07 2.08 8.14 -2.39 -0.02 2.06 15 20 H 0.08 2.34 5.82 -2.38 -0.01 2.32 15 21 H 0.08 2.57 8.03 -2.39 -0.02 2.55 15 22 H 0.10 2.81 7.49 -2.39 -0.02 2.79 15 23 H 0.00 -0.04 7.43 -2.39 -0.02 -0.06 15 24 H 0.02 1.20 7.17 -2.39 -0.02 1.18 15 25 H 0.04 1.57 7.04 -2.38 -0.02 1.56 15 26 H 0.25 13.87 8.31 -92.71 -0.77 13.10 15 Total: -1.00 -62.08 239.27 3.80 -58.29 By element: Atomic # 1 Polarization: -4.36 SS G_CDS: 1.19 Total: -3.18 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 3.94 Total: -7.14 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -2.03 Total: -106.58 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: 15.31 SS G_CDS: -1.32 Total: 13.99 kcal Total: -62.08 3.80 -58.29 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590602380.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.354 kcal (2) G-P(sol) polarization free energy of solvation -62.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds