Wall clock time and date at job start Sun Mar 29 2020 21:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47711 * 2 1 4 4 C 1.53004 * 109.47070 * 120.00187 * 2 1 3 5 5 C 1.50701 * 109.47211 * 185.00010 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 S 1.81407 * 109.46859 * 239.99470 * 2 1 3 14 14 C 1.76202 * 102.99747 * 65.00604 * 13 2 1 15 15 C 1.35943 * 126.68635 * 179.68609 * 14 13 2 16 16 N 1.33263 * 108.84521 * 179.88981 * 15 14 13 17 17 N 1.28727 * 110.01707 * 0.38420 * 16 15 14 18 18 N 1.36323 * 126.68839 * 359.97438 * 14 13 2 19 19 H 0.96998 * 126.84958 * 359.97438 * 18 14 13 20 20 H 1.09000 * 109.46991 * 300.00620 * 1 2 3 21 21 H 1.09004 * 109.46837 * 59.99882 * 1 2 3 22 22 H 1.08998 * 109.47711 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47211 * 64.99037 * 4 2 1 24 24 H 1.09007 * 109.46376 * 304.99579 * 4 2 1 25 25 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 26 26 H 1.08000 * 125.57321 * 0.03258 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2307 -1.1981 2.3551 8 7 3.5767 -1.8422 3.2968 9 14 6.0930 -1.0730 2.4296 10 1 6.5847 -0.3025 1.2593 11 1 6.4930 -0.3814 3.6815 12 1 6.6821 -2.4359 2.4073 13 16 2.1346 -0.8553 -1.4811 14 6 1.5827 0.1845 -2.7922 15 6 1.7851 -0.0091 -4.1225 16 7 1.2147 0.9902 -4.7947 17 7 0.6660 1.8165 -3.9741 18 7 0.8743 1.3427 -2.6701 19 1 0.5743 1.7570 -1.8459 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.7515 -1.7715 1.2057 24 1 1.6053 -0.2617 2.1370 25 1 4.0614 -2.2527 4.0299 26 1 2.3188 -0.8385 -4.5626 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591128162.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:38 Heat of formation + Delta-G solvation = 76.869867 kcal Electronic energy + Delta-G solvation = -11757.614981 eV Core-core repulsion = 9578.296154 eV Total energy + Delta-G solvation = -2179.318827 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.62821 -35.04208 -33.07795 -32.11624 -30.31461 -27.77725 -23.62061 -23.25494 -22.16270 -20.62596 -18.85246 -16.56225 -16.22192 -15.33075 -14.91434 -14.60634 -14.18116 -13.41404 -12.96389 -12.18256 -12.07746 -11.81683 -11.42792 -11.22354 -10.97355 -10.79451 -10.65293 -10.63098 -9.78601 -9.76652 -9.62179 -9.31699 -8.55802 -7.22240 -6.20231 -4.24143 1.36942 1.51659 2.35205 2.69091 3.12857 3.22225 3.30891 3.35274 4.31772 4.93459 5.16013 5.17316 5.19179 5.26539 5.37690 5.53471 5.91412 6.23651 6.25285 6.28827 6.83430 7.25544 7.31474 7.75753 8.07983 8.28993 8.80731 9.42119 10.90572 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.048025 B = 0.007948 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.884001 B = 3522.255620 C = 3860.431536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.083 4.083 3 H 0.083 0.917 4 C 0.041 3.959 5 C -0.529 4.529 6 H 0.065 0.935 7 C 0.063 3.937 8 N -0.891 5.891 9 Si 0.893 3.107 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.282 1.282 13 S 0.017 5.983 14 C 0.049 3.951 15 C -0.071 4.071 16 N -0.229 5.229 17 N -0.087 5.087 18 N -0.477 5.477 19 H 0.441 0.559 20 H 0.072 0.928 21 H 0.037 0.963 22 H 0.072 0.928 23 H 0.031 0.969 24 H 0.041 0.959 25 H 0.263 0.737 26 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.338 2.382 -6.749 8.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.212 4.212 3 H 0.102 0.898 4 C 0.002 3.998 5 C -0.567 4.567 6 H 0.083 0.917 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.721 3.279 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.208 1.208 13 S 0.251 5.749 14 C -0.198 4.198 15 C -0.236 4.236 16 N -0.098 5.098 17 N -0.069 5.069 18 N -0.198 5.198 19 H 0.289 0.711 20 H 0.091 0.909 21 H 0.056 0.944 22 H 0.091 0.909 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -4.310 2.385 -7.582 9.042 hybrid contribution 0.601 0.651 1.457 1.705 sum -3.709 3.036 -6.125 7.778 Atomic orbital electron populations 1.22261 0.94412 1.03447 1.01077 1.23941 0.96928 1.02816 0.97540 0.89821 1.19050 0.96830 0.95758 0.88123 1.21239 0.91169 1.35393 1.08931 0.91700 1.24977 0.98779 0.94819 0.95395 1.69946 1.35818 1.35166 1.12056 0.86497 0.85257 0.78037 0.78106 1.19443 1.20978 1.20792 1.86534 1.67367 1.28117 0.92844 1.24979 0.99213 0.92917 1.02646 1.22924 1.10010 1.02590 0.88038 1.74126 1.07133 1.01614 1.26953 1.81761 1.22826 1.19182 0.83081 1.48623 1.42146 1.18204 1.10855 0.71112 0.90940 0.94426 0.90880 0.95042 0.94097 0.92727 0.79588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.91 37.16 0.33 -1.80 15 2 C -0.08 -1.44 2.26 -26.73 -0.06 -1.50 15 3 H 0.08 1.41 8.11 -51.93 -0.42 0.99 15 4 C 0.04 0.91 4.45 -27.88 -0.12 0.79 15 5 C -0.53 -13.41 8.53 -34.44 -0.29 -13.71 15 6 H 0.06 1.63 7.60 -52.49 -0.40 1.23 15 7 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 8 N -0.89 -24.84 13.29 55.43 0.74 -24.11 15 9 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 15 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 13 S 0.02 0.28 20.86 -107.50 -2.24 -1.96 15 14 C 0.05 0.76 7.06 -16.38 -0.12 0.64 15 15 C -0.07 -1.09 11.86 -17.75 -0.21 -1.30 15 16 N -0.23 -3.84 12.31 30.26 0.37 -3.47 15 17 N -0.09 -1.45 13.90 60.35 0.84 -0.61 15 18 N -0.48 -7.07 6.62 31.46 0.21 -6.86 15 19 H 0.44 5.53 6.76 -182.45 -1.23 4.30 15 20 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 21 H 0.04 0.46 5.52 -51.93 -0.29 0.17 15 22 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 23 H 0.03 0.76 8.14 -51.93 -0.42 0.33 15 24 H 0.04 0.97 8.14 -51.93 -0.42 0.54 15 25 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 26 H 0.19 2.32 8.06 -52.49 -0.42 1.90 15 LS Contribution 243.29 15.07 3.67 3.67 Total: -1.00 -28.20 243.29 -5.60 -33.80 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -3.59 Total: -0.63 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -0.57 Total: -15.30 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 2.16 Total: -35.05 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -2.24 Total: -1.96 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.20 -5.60 -33.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591128162.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.666 kcal (2) G-P(sol) polarization free energy of solvation -28.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds