Wall clock time and date at job start Sun Mar 29 2020 21:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50699 * 109.47482 * 174.99860 * 4 2 1 6 6 H 1.08000 * 120.00130 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00220 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99957 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00316 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46470 * 60.00276 * 9 7 5 11 11 H 1.48495 * 109.47116 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47160 * 300.00311 * 9 7 5 13 13 S 1.81405 * 109.47264 * 119.99579 * 2 1 3 14 14 C 1.76193 * 102.99977 * 295.00283 * 13 2 1 15 15 C 1.35947 * 126.68918 * 179.97438 * 14 13 2 16 16 N 1.33262 * 108.85154 * 180.02562 * 15 14 13 17 17 N 1.28731 * 110.01156 * 0.02562 * 16 15 14 18 18 N 1.36323 * 126.69389 * 359.68946 * 14 13 2 19 19 H 0.97001 * 126.84670 * 359.97438 * 18 14 13 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 23 23 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 24 24 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 25 25 H 0.96998 * 119.99888 * 180.02562 * 8 7 5 26 26 H 1.08001 * 125.57201 * 0.02644 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1935 -2.3576 8 7 3.5765 -1.8379 -3.2993 9 14 6.0922 -1.0611 -2.4367 10 1 6.6846 -1.6861 -1.2269 11 1 6.5872 -1.7623 -3.6484 12 1 6.4845 0.3698 -2.4972 13 16 2.1347 -0.8550 1.4812 14 6 1.5827 0.1847 2.7922 15 6 1.7796 -0.0121 4.1228 16 7 1.2127 0.9894 4.7948 17 7 0.6640 1.8156 3.9741 18 7 0.8795 1.3462 2.6697 19 1 0.5847 1.7635 1.8452 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.7517 -1.7715 -1.2055 24 1 1.6055 -0.2617 -2.1369 25 1 4.0610 -2.2453 -4.0343 26 1 2.3090 -0.8440 4.5633 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591128170.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:39 Heat of formation + Delta-G solvation = 59.016685 kcal Electronic energy + Delta-G solvation = -11757.729165 eV Core-core repulsion = 9577.636166 eV Total energy + Delta-G solvation = -2180.092999 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.86845 -36.62504 -34.55602 -33.74172 -31.54921 -29.46655 -25.33982 -24.52381 -23.48203 -22.08193 -20.09770 -18.52243 -17.56996 -16.60941 -16.54759 -16.17594 -15.35831 -14.92488 -14.40909 -13.78099 -13.47797 -13.33685 -12.88777 -12.73581 -12.51454 -12.45048 -12.20994 -11.97702 -11.52827 -11.32726 -11.10305 -10.80508 -10.54351 -8.54381 -8.20972 -6.29766 0.12239 0.19155 1.04352 1.43833 1.45069 1.46353 1.52196 1.92780 2.41832 3.15614 3.74627 3.87436 3.94345 3.97405 4.16904 4.31803 4.71403 4.80652 5.09650 5.10407 5.37419 5.45978 5.71684 5.76188 6.13955 6.82991 7.04818 7.39588 8.89944 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.048055 B = 0.007942 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.530837 B = 3524.536012 C = 3860.982044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 H 0.090 0.910 4 C 0.046 3.954 5 C -0.536 4.536 6 H 0.066 0.934 7 C 0.011 3.989 8 N -0.928 5.928 9 Si 0.952 3.048 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.269 1.269 13 S 0.005 5.995 14 C 0.049 3.951 15 C -0.066 4.066 16 N -0.245 5.245 17 N -0.099 5.099 18 N -0.465 5.465 19 H 0.451 0.549 20 H 0.070 0.930 21 H 0.083 0.917 22 H 0.058 0.942 23 H 0.009 0.991 24 H 0.024 0.976 25 H 0.264 0.736 26 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.133 2.927 7.671 9.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.206 4.206 3 H 0.108 0.892 4 C 0.008 3.992 5 C -0.574 4.574 6 H 0.084 0.916 7 C -0.188 4.188 8 N -0.568 5.568 9 Si 0.777 3.223 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.195 1.195 13 S 0.239 5.761 14 C -0.198 4.198 15 C -0.231 4.231 16 N -0.114 5.114 17 N -0.080 5.080 18 N -0.189 5.189 19 H 0.300 0.700 20 H 0.089 0.911 21 H 0.102 0.898 22 H 0.076 0.924 23 H 0.027 0.973 24 H 0.042 0.958 25 H 0.072 0.928 26 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.116 2.951 8.504 9.898 hybrid contribution 0.524 0.514 -1.696 1.848 sum -3.592 3.465 6.808 8.441 Atomic orbital electron populations 1.22192 0.91771 1.03858 1.02644 1.23731 0.99087 1.02186 0.95636 0.89209 1.18818 0.95414 0.94867 0.90134 1.21563 0.92855 1.34631 1.08386 0.91563 1.25761 1.02864 0.94834 0.95352 1.70042 1.37522 1.36538 1.12709 0.85688 0.80439 0.78547 0.77593 1.19270 1.21291 1.19453 1.86562 1.68021 1.28349 0.93131 1.24793 0.99950 0.92892 1.02186 1.23406 1.09267 1.02562 0.87875 1.74155 1.07792 1.02118 1.27349 1.81742 1.23027 1.19628 0.83579 1.48627 1.41600 1.17703 1.10925 0.69977 0.91105 0.89823 0.92366 0.97306 0.95832 0.92760 0.77145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 8.91 71.98 0.64 -3.16 15 2 C -0.08 -2.57 2.25 30.59 0.07 -2.50 15 3 H 0.09 2.87 8.10 -2.39 -0.02 2.85 15 4 C 0.05 2.07 4.45 29.85 0.13 2.20 15 5 C -0.54 -27.03 8.53 25.60 0.22 -26.81 15 6 H 0.07 3.24 7.60 -2.91 -0.02 3.22 15 7 C 0.01 0.57 5.46 84.65 0.46 1.03 15 8 N -0.93 -52.34 13.29 21.45 0.28 -52.05 15 9 Si 0.95 41.73 29.54 68.60 2.03 43.76 15 10 H -0.27 -11.41 7.11 99.48 0.71 -10.71 15 11 H -0.29 -12.52 7.11 99.48 0.71 -11.82 15 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 13 S 0.01 0.17 20.86 -56.49 -1.18 -1.00 15 14 C 0.05 1.41 7.06 83.46 0.59 1.99 15 15 C -0.07 -1.86 11.86 83.94 1.00 -0.87 15 16 N -0.25 -7.71 12.31 -58.19 -0.72 -8.43 15 17 N -0.10 -3.07 13.90 37.02 0.51 -2.56 15 18 N -0.47 -12.67 6.62 -54.38 -0.36 -13.03 15 19 H 0.45 10.12 6.78 -213.20 -1.45 8.67 15 20 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 21 H 0.08 2.01 8.14 -2.39 -0.02 1.99 15 22 H 0.06 1.27 5.55 -2.38 -0.01 1.26 15 23 H 0.01 0.42 8.14 -2.39 -0.02 0.40 15 24 H 0.02 1.13 8.14 -2.39 -0.02 1.11 15 25 H 0.26 14.19 8.31 -92.71 -0.77 13.42 15 26 H 0.21 4.64 8.06 -2.91 -0.02 4.62 15 Total: -1.00 -58.69 243.32 3.43 -55.26 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -0.25 Total: 6.18 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 3.11 Total: -28.12 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -0.28 Total: -76.07 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -1.18 Total: -1.00 kcal Total: -58.69 3.43 -55.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591128170.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.281 kcal (2) G-P(sol) polarization free energy of solvation -58.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds