Wall clock time and date at job start Sun Mar 29 2020 21:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.52342 * 2 1 4 4 C 1.53126 * 109.52330 * 239.87692 * 2 1 3 5 5 C 1.53044 * 109.27388 * 182.50040 * 4 2 1 6 6 N 1.46853 * 109.57336 * 59.08743 * 5 4 2 7 7 C 1.46847 * 111.19577 * 298.28487 * 6 5 4 8 8 C 1.53036 * 109.52237 * 61.74333 * 7 6 5 9 9 H 1.08996 * 109.53335 * 60.78454 * 8 7 6 10 10 N 1.46901 * 109.50114 * 180.87889 * 8 7 6 11 11 C 1.46899 * 110.99997 * 274.80576 * 10 8 7 12 12 C 1.53004 * 109.47215 * 180.02562 * 11 10 8 13 13 C 1.50695 * 109.47083 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00412 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99972 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99754 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 119.99966 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47303 * 90.00478 * 17 15 13 19 19 H 1.48504 * 109.47147 * 210.00373 * 17 15 13 20 20 H 1.48499 * 109.47545 * 329.99888 * 17 15 13 21 21 H 1.09002 * 109.47153 * 299.99669 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 24 24 H 1.08994 * 109.49988 * 302.37959 * 4 2 1 25 25 H 1.08999 * 109.50130 * 62.49905 * 4 2 1 26 26 H 1.08995 * 109.41622 * 299.06709 * 5 4 2 27 27 H 1.09005 * 109.46179 * 179.12710 * 5 4 2 28 28 H 1.00900 * 110.99291 * 174.19095 * 6 5 4 29 29 H 1.09002 * 109.46320 * 301.72656 * 7 6 5 30 30 H 1.08996 * 109.45398 * 181.75699 * 7 6 5 31 31 H 1.00896 * 111.00449 * 38.75955 * 10 8 7 32 32 H 1.09008 * 109.47125 * 299.99961 * 11 10 8 33 33 H 1.08997 * 109.47556 * 59.99915 * 11 10 8 34 34 H 1.09000 * 109.46883 * 299.99583 * 12 11 10 35 35 H 1.08997 * 109.47224 * 59.99349 * 12 11 10 36 36 H 0.96999 * 119.99631 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0417 -0.7243 -1.2483 5 6 3.5708 -0.7757 -1.2113 6 7 4.0103 -1.4789 0.0007 7 6 3.5709 -0.7745 1.2120 8 6 2.0418 -0.7244 1.2481 9 1 1.6442 -1.7390 1.2687 10 7 1.6030 -0.0013 2.4493 11 6 1.5335 -0.9004 3.6089 12 6 1.0735 -0.1133 4.8377 13 6 1.0015 -1.0358 6.0271 14 1 1.2586 -2.0790 5.9178 15 6 0.6085 -0.5477 7.2553 16 7 0.2959 0.7229 7.3886 17 14 0.5200 -1.6909 8.7298 18 1 1.8296 -1.6983 9.4298 19 1 -0.5360 -1.2177 9.6605 20 1 0.1958 -3.0658 8.2716 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.6447 -1.7392 -1.2685 25 1 1.7161 -0.1877 -2.1395 26 1 3.9675 0.2395 -1.2062 27 1 3.9378 -1.3044 -2.0911 28 1 5.0109 -1.6085 0.0007 29 1 3.9675 0.2408 1.2058 30 1 3.9379 -1.3024 2.0922 31 1 2.2054 0.7858 2.6377 32 1 0.8238 -1.7023 3.4049 33 1 2.5187 -1.3266 3.7979 34 1 1.7829 0.6887 5.0418 35 1 0.0882 0.3126 4.6484 36 1 0.0191 1.0662 8.2525 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591572803.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:15 Heat of formation + Delta-G solvation = -22.149458 kcal Electronic energy + Delta-G solvation = -14385.992156 eV Core-core repulsion = 12096.718758 eV Total energy + Delta-G solvation = -2289.273398 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.08100 -35.28596 -33.39001 -32.69776 -30.26893 -28.13126 -26.51063 -24.05922 -22.14877 -21.81783 -20.67713 -19.40703 -16.65040 -16.15215 -15.08731 -14.50227 -14.36648 -14.31678 -14.00803 -13.88706 -12.99829 -12.61945 -12.52501 -12.01529 -11.82428 -11.71396 -11.24487 -11.01130 -10.93142 -10.59101 -10.55036 -10.38995 -10.20808 -9.96195 -9.29629 -9.11271 -8.52575 -8.33286 -7.74735 -5.97937 -4.00261 3.33405 3.39588 3.43311 4.13084 4.46271 4.72989 4.91325 4.92194 5.16019 5.23898 5.37219 5.38102 5.51905 5.62916 5.76965 5.81924 5.82896 6.04748 6.10395 6.14877 6.28259 6.42420 6.49180 6.56294 6.69461 6.92194 7.01640 7.29927 7.54979 7.75929 7.86224 7.99638 8.11228 8.46275 9.07195 9.63455 11.13534 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053660 B = 0.005775 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.681689 B = 4847.585860 C = 5115.760535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 H 0.062 0.938 4 C -0.113 4.113 5 C 0.057 3.943 6 N -0.687 5.687 7 C 0.029 3.971 8 C 0.094 3.906 9 H 0.081 0.919 10 N -0.681 5.681 11 C 0.067 3.933 12 C 0.025 3.975 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.072 0.928 22 H 0.047 0.953 23 H 0.041 0.959 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.026 0.974 27 H 0.070 0.930 28 H 0.338 0.662 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.333 0.667 32 H 0.058 0.942 33 H 0.015 0.985 34 H 0.012 0.988 35 H 0.025 0.975 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 -1.595 -15.832 16.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.099 4.099 3 H 0.080 0.920 4 C -0.152 4.152 5 C -0.072 4.072 6 N -0.318 5.318 7 C -0.102 4.102 8 C -0.017 4.017 9 H 0.099 0.901 10 N -0.311 5.311 11 C -0.061 4.061 12 C -0.012 4.012 13 C -0.560 4.560 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.092 0.908 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.156 0.844 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.151 0.849 32 H 0.076 0.924 33 H 0.033 0.967 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.147 -1.960 -15.832 16.483 hybrid contribution 1.619 0.085 1.123 1.972 sum 5.767 -1.875 -14.710 15.910 Atomic orbital electron populations 1.21673 0.94470 1.01499 1.01682 1.21124 0.96597 0.98737 0.93454 0.91959 1.21677 0.94365 1.01373 0.97763 1.21933 0.96482 0.96112 0.92677 1.60262 1.18216 1.51487 1.01866 1.22778 0.98379 0.96286 0.92786 1.21611 0.90875 0.98226 0.90956 0.90108 1.60725 1.55347 1.11017 1.03964 1.22181 0.98183 0.95420 0.90349 1.19067 0.97129 0.95105 0.89916 1.21189 1.45258 0.95615 0.93902 0.92773 1.25002 0.95393 0.95054 0.98911 1.69978 1.45880 1.13140 1.24331 0.86591 0.77680 0.81095 0.82614 1.20735 1.21202 1.19866 0.90849 0.93353 0.93977 0.91230 0.91732 0.95531 0.91152 0.84433 0.95335 0.90783 0.84908 0.92353 0.96703 0.96937 0.95676 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.07 37.16 0.34 -1.48 16 2 C -0.08 -1.05 2.48 -90.50 -0.22 -1.27 16 3 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.11 -1.26 5.38 -26.64 -0.14 -1.41 16 5 C 0.06 0.60 6.55 -3.83 -0.03 0.58 16 6 N -0.69 -8.19 6.85 -113.81 -0.78 -8.97 16 7 C 0.03 0.39 5.80 -3.83 -0.02 0.37 16 8 C 0.09 1.43 2.05 -67.63 -0.14 1.29 16 9 H 0.08 1.35 7.80 -51.93 -0.41 0.94 16 10 N -0.68 -12.14 5.61 -106.64 -0.60 -12.74 16 11 C 0.07 1.42 5.42 -3.82 -0.02 1.40 16 12 C 0.03 0.66 5.23 -27.88 -0.15 0.52 16 13 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.67 5.46 -17.81 -0.10 1.58 16 16 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 17 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H 0.07 1.13 7.69 -51.93 -0.40 0.73 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.34 3.40 8.90 -39.29 -0.35 3.05 16 29 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 30 H 0.07 1.09 7.49 -51.93 -0.39 0.70 16 31 H 0.33 5.81 8.46 -39.29 -0.33 5.47 16 32 H 0.06 1.27 8.06 -51.92 -0.42 0.85 16 33 H 0.01 0.31 7.47 -51.93 -0.39 -0.08 16 34 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 286.46 15.07 4.32 4.32 Total: -1.00 -29.76 286.46 -8.59 -38.34 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.45 Total: 2.33 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -0.79 Total: -13.70 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -0.64 Total: -48.15 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.76 -8.59 -38.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591572803.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.195 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds