Wall clock time and date at job start Sun Mar 29 2020 21:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.52422 * 2 1 4 4 C 1.53126 * 109.52256 * 239.87218 * 2 1 3 5 5 C 1.53039 * 109.28009 * 297.75091 * 4 2 1 6 6 N 1.46854 * 109.52227 * 300.82107 * 5 4 2 7 7 C 1.46847 * 111.19790 * 61.74204 * 6 5 4 8 8 C 1.53034 * 109.51345 * 298.26320 * 7 6 5 9 9 H 1.09009 * 109.50412 * 299.23146 * 8 7 6 10 10 N 1.46903 * 109.50164 * 179.11879 * 8 7 6 11 11 C 1.46901 * 111.00217 * 85.00304 * 10 8 7 12 12 C 1.53001 * 109.47069 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.46698 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00620 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99907 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99486 * 359.97438 * 15 13 12 17 17 Si 1.86789 * 120.00222 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47236 * 59.99772 * 17 15 13 19 19 H 1.48505 * 109.47440 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47342 * 300.00017 * 17 15 13 21 21 H 1.09011 * 109.47336 * 180.12888 * 1 2 3 22 22 H 1.09003 * 109.47102 * 300.12533 * 1 2 3 23 23 H 1.08992 * 109.47417 * 60.12540 * 1 2 3 24 24 H 1.08994 * 109.50076 * 177.81172 * 4 2 1 25 25 H 1.09000 * 109.50123 * 57.69173 * 4 2 1 26 26 H 1.08993 * 109.46667 * 180.80353 * 5 4 2 27 27 H 1.09008 * 109.45528 * 60.82642 * 5 4 2 28 28 H 1.00893 * 110.99835 * 297.64287 * 6 5 4 29 29 H 1.09002 * 109.46481 * 58.27472 * 7 6 5 30 30 H 1.08994 * 109.46283 * 178.25325 * 7 6 5 31 31 H 1.00895 * 111.00378 * 321.04156 * 10 8 7 32 32 H 1.09006 * 109.46844 * 299.99735 * 11 10 8 33 33 H 1.08998 * 109.47311 * 59.99715 * 11 10 8 34 34 H 1.09005 * 109.46681 * 299.98958 * 12 11 10 35 35 H 1.08998 * 109.47484 * 59.99580 * 12 11 10 36 36 H 0.97003 * 119.99752 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0416 -0.7244 -1.2483 5 6 1.5765 -2.1820 -1.2129 6 7 2.0924 -2.8325 -0.0016 7 6 1.5765 -2.1833 1.2104 8 6 2.0416 -0.7258 1.2471 9 1 3.1310 -0.6918 1.2668 10 7 1.5080 -0.0709 2.4489 11 6 2.3766 -0.3109 3.6090 12 6 1.7891 0.3846 4.8386 13 6 2.6799 0.1377 6.0288 14 1 3.5752 -0.4561 5.9194 15 6 2.3518 0.6701 7.2577 16 7 1.2617 1.3938 7.3909 17 14 3.4556 0.3636 8.7331 18 1 4.8110 0.9044 8.4582 19 1 2.8861 1.0398 9.9264 20 1 3.5475 -1.0965 8.9878 21 1 -0.3634 -1.0277 0.0023 22 1 -0.3633 0.5158 0.8889 23 1 -0.3634 0.5118 -0.8910 24 1 3.1309 -0.6904 -1.2678 25 1 1.6457 -0.2376 -2.1395 26 1 1.9512 -2.7042 -2.0932 27 1 0.4870 -2.2154 -1.2071 28 1 3.1012 -2.8488 -0.0016 29 1 0.4870 -2.2169 1.2048 30 1 1.9514 -2.7064 2.0901 31 1 0.5634 -0.3724 2.6358 32 1 2.4449 -1.3826 3.7962 33 1 3.3711 0.0866 3.4067 34 1 1.7206 1.4563 4.6517 35 1 0.7947 -0.0134 5.0407 36 1 1.0311 1.7687 8.2553 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591572806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:22 Heat of formation + Delta-G solvation = -19.924899 kcal Electronic energy + Delta-G solvation = -14476.510467 eV Core-core repulsion = 12187.333533 eV Total energy + Delta-G solvation = -2289.176934 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.57186 -35.33222 -33.09189 -32.56225 -30.33708 -28.05255 -26.41271 -24.07870 -23.30354 -21.93991 -20.59239 -18.89185 -16.35449 -16.09716 -15.61778 -14.82092 -14.47560 -14.23678 -14.00666 -13.70474 -13.16342 -12.75071 -12.51419 -12.06015 -11.82762 -11.47370 -11.34972 -11.07288 -10.93759 -10.81522 -10.66352 -10.46822 -10.27885 -10.07848 -9.33084 -9.16531 -8.74295 -8.33526 -7.55136 -5.99287 -4.01979 3.33792 3.38112 3.40485 4.22554 4.44859 4.67784 4.81442 4.88788 5.10013 5.20256 5.35318 5.36571 5.40703 5.43449 5.68581 5.79512 5.81777 5.90941 5.93726 6.03251 6.23882 6.33391 6.36779 6.42267 6.55041 6.92769 6.97894 7.31945 7.50495 7.73186 7.83107 7.96061 8.08751 8.43908 9.05063 9.61746 11.12121 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.060861 B = 0.005696 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.956391 B = 4914.274505 C = 5153.442665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 H 0.074 0.926 4 C -0.153 4.153 5 C 0.055 3.945 6 N -0.684 5.684 7 C 0.026 3.974 8 C 0.058 3.942 9 H 0.070 0.930 10 N -0.682 5.682 11 C 0.066 3.934 12 C 0.026 3.974 13 C -0.522 4.522 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.052 0.948 22 H 0.066 0.934 23 H 0.048 0.952 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.338 0.662 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.337 0.663 32 H 0.015 0.985 33 H 0.056 0.944 34 H 0.024 0.976 35 H 0.013 0.987 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.053 -5.223 -15.839 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 H 0.092 0.908 4 C -0.193 4.193 5 C -0.075 4.075 6 N -0.313 5.313 7 C -0.105 4.105 8 C -0.055 4.055 9 H 0.088 0.912 10 N -0.312 5.312 11 C -0.062 4.062 12 C -0.012 4.012 13 C -0.561 4.561 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.155 0.845 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.032 0.968 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.257 -5.014 -15.834 16.611 hybrid contribution 0.935 -0.148 1.099 1.450 sum 0.678 -5.162 -14.735 15.628 Atomic orbital electron populations 1.21869 0.95258 1.01409 1.01986 1.21105 0.96205 0.99605 0.93010 0.90789 1.22335 1.00733 0.97716 0.98527 1.22059 1.00766 0.91953 0.92738 1.60637 1.13910 1.54810 1.01896 1.22858 1.00929 0.93881 0.92830 1.22264 0.99164 0.92347 0.91692 0.91179 1.60645 1.06005 1.60923 1.03645 1.22187 0.96033 0.97513 0.90478 1.19059 0.95875 0.96397 0.89848 1.21139 1.08712 1.32416 0.93867 0.92858 1.25000 0.95263 0.95145 0.98907 1.69967 1.24444 1.34398 1.24462 0.86646 0.80845 0.78364 0.82058 1.20246 1.21251 1.20278 0.92906 0.91466 0.93334 0.92239 0.91571 0.91200 0.90758 0.84483 0.90673 0.90795 0.84535 0.96638 0.92569 0.95725 0.96840 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.29 37.15 0.31 -1.44 16 2 C -0.08 -1.00 2.95 -90.51 -0.27 -1.27 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.15 -1.57 5.58 -26.65 -0.15 -1.72 16 5 C 0.05 0.55 6.31 -3.83 -0.02 0.53 16 6 N -0.68 -7.96 6.87 -113.81 -0.78 -8.74 16 7 C 0.03 0.35 5.56 -3.84 -0.02 0.32 16 8 C 0.06 0.82 2.31 -67.64 -0.16 0.67 16 9 H 0.07 1.06 7.80 -51.92 -0.41 0.66 16 10 N -0.68 -11.99 5.70 -106.64 -0.61 -12.59 16 11 C 0.07 1.39 5.42 -3.82 -0.02 1.37 16 12 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 13 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.69 5.46 -17.81 -0.10 1.59 16 16 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 17 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H 0.05 0.60 4.92 -51.92 -0.26 0.35 16 22 H 0.07 0.89 7.19 -51.93 -0.37 0.52 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.77 6.51 -51.92 -0.34 0.43 16 28 H 0.34 3.64 8.86 -39.30 -0.35 3.30 16 29 H 0.07 1.00 6.48 -51.93 -0.34 0.67 16 30 H 0.07 1.07 7.48 -51.93 -0.39 0.69 16 31 H 0.34 5.79 7.70 -39.29 -0.30 5.49 16 32 H 0.02 0.32 7.45 -51.93 -0.39 -0.07 16 33 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 34 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 278.45 15.07 4.20 4.20 Total: -1.00 -29.52 278.45 -8.42 -37.94 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.05 Total: 3.48 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -0.89 Total: -14.69 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.65 Total: -47.72 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.52 -8.42 -37.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591572806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.019 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds