Wall clock time and date at job start Sun Mar 29 2020 22:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99650 * 2 1 4 4 O 1.20828 * 120.00167 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99879 * 179.97438 * 3 2 1 6 6 C 1.52999 * 113.01264 * 311.64211 * 5 3 2 7 7 C 1.53932 * 113.73186 * 83.27635 * 5 3 2 8 8 N 1.47959 * 86.18045 * 90.63955 * 7 5 3 9 9 C 1.46902 * 110.99905 * 137.58303 * 8 7 5 10 10 C 1.50699 * 109.47319 * 70.64321 * 9 8 7 11 11 H 1.07998 * 119.99582 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00183 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99663 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00028 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47291 * 59.99724 * 14 12 10 16 16 H 1.48500 * 109.47087 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47356 * 299.99700 * 14 12 10 18 18 C 1.47957 * 90.76368 * 24.69138 * 8 7 5 19 19 H 1.08991 * 109.47372 * 299.99632 * 1 2 3 20 20 H 1.09004 * 109.46888 * 59.99955 * 1 2 3 21 21 H 1.09003 * 109.46665 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47019 * 288.36312 * 6 5 3 23 23 H 1.09007 * 109.47031 * 48.35697 * 6 5 3 24 24 H 1.09000 * 109.47575 * 168.35814 * 6 5 3 25 25 H 1.09004 * 113.75969 * 204.95751 * 7 5 3 26 26 H 1.08999 * 113.76302 * 336.32207 * 7 5 3 27 27 H 1.09007 * 109.46697 * 190.64055 * 9 8 7 28 28 H 1.09001 * 109.46915 * 310.63777 * 9 8 7 29 29 H 0.97007 * 119.99712 * 180.02562 * 13 12 10 30 30 H 1.09000 * 113.75975 * 220.99328 * 18 8 7 31 31 H 1.08998 * 113.76273 * 89.62912 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.2122 0.3721 1.0534 7 6 4.1942 1.1424 -1.3986 8 7 4.0923 2.6164 -1.4756 9 6 5.3090 3.1985 -2.0576 10 6 5.3724 2.8657 -3.5260 11 1 4.5876 2.2799 -3.9812 12 6 6.4329 3.3080 -4.2880 13 7 7.3888 4.0209 -3.7335 14 14 6.5118 2.8948 -6.1080 15 1 5.3192 3.4529 -6.7945 16 1 7.7417 3.4833 -6.6963 17 1 6.5370 1.4200 -6.2801 18 6 4.1113 2.7146 0.0006 19 1 -0.3633 0.5137 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 4.0339 0.7861 2.0458 23 1 3.7774 -0.6257 0.9925 24 1 5.2853 0.3124 0.8720 25 1 5.2197 0.7731 -1.3866 26 1 3.5613 0.6204 -2.1163 27 1 5.2903 4.2811 -1.9309 28 1 6.1846 2.7889 -1.5539 29 1 8.1347 4.3325 -4.2697 30 1 3.4121 3.4488 0.4009 31 1 5.1125 2.8052 0.4219 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591631294.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:07 Heat of formation + Delta-G solvation = -53.705308 kcal Electronic energy + Delta-G solvation = -14480.147756 eV Core-core repulsion = 11955.954236 eV Total energy + Delta-G solvation = -2524.193519 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.76980 -38.69574 -36.07674 -33.18561 -31.42059 -27.84992 -27.50382 -25.64902 -24.44551 -22.77762 -20.57614 -19.07921 -17.01433 -16.39783 -16.19226 -16.15724 -14.88610 -14.36961 -14.11104 -13.82477 -13.01254 -12.93875 -12.54132 -12.47852 -12.03407 -11.89097 -11.67116 -11.22588 -10.93028 -10.65315 -10.61925 -10.48683 -10.18207 -10.03190 -9.59653 -9.18545 -8.48647 -7.75365 -6.05296 -4.07219 2.48121 2.85302 3.32767 3.36664 3.40180 4.41126 4.55345 4.73778 4.93847 5.14115 5.16192 5.22983 5.30686 5.51681 5.68629 5.81104 5.89817 5.98157 6.17260 6.23168 6.27201 6.47762 6.59064 6.68521 7.18608 7.63789 7.87529 8.03380 8.10438 8.41679 8.99730 9.57288 11.05894 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044433 B = 0.007428 C = 0.006968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.013993 B = 3768.547298 C = 4017.227103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.360 6.360 3 C 0.493 3.507 4 O -0.494 6.494 5 C -0.101 4.101 6 C -0.134 4.134 7 C 0.043 3.957 8 N -0.475 5.475 9 C 0.160 3.840 10 C -0.512 4.512 11 H 0.061 0.939 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.899 3.101 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.023 3.977 19 H 0.059 0.941 20 H 0.062 0.938 21 H 0.097 0.903 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.034 0.966 28 H 0.001 0.999 29 H 0.262 0.738 30 H 0.090 0.910 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.931 -8.906 8.947 14.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.336 3.664 4 O -0.380 6.380 5 C -0.102 4.102 6 C -0.192 4.192 7 C -0.086 4.086 8 N -0.198 5.198 9 C 0.034 3.966 10 C -0.550 4.550 11 H 0.079 0.921 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.727 3.273 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.107 4.107 19 H 0.078 0.922 20 H 0.081 0.919 21 H 0.116 0.884 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.052 0.948 28 H 0.018 0.982 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.509 -8.175 8.507 14.547 hybrid contribution 0.678 -0.349 -0.669 1.014 sum -7.831 -8.524 7.838 13.980 Atomic orbital electron populations 1.23205 0.76958 1.03226 1.02432 1.86494 1.22867 1.33832 1.84522 1.22908 0.90727 0.81013 0.71802 1.90635 1.66589 1.36345 1.44386 1.22258 0.87711 0.99964 1.00317 1.21736 1.01122 0.99106 0.97209 1.23764 0.99926 0.93730 0.91168 1.68675 1.39452 1.05274 1.06387 1.20230 0.84962 0.96080 0.95360 1.21052 1.06754 1.33771 0.93445 0.92078 1.24983 0.95521 0.95121 0.98836 1.69948 1.10963 1.36486 1.36298 0.86545 0.77349 0.78600 0.84840 1.20150 1.21273 1.20227 1.23941 1.00034 0.93036 0.93648 0.92226 0.91923 0.88429 0.92180 0.91343 0.91009 0.89883 0.90149 0.94758 0.98159 0.92803 0.89194 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.27 10.18 -39.26 -0.40 -5.66 16 3 C 0.49 8.48 6.95 36.01 0.25 8.73 16 4 O -0.49 -9.81 15.64 -18.75 -0.29 -10.10 16 5 C -0.10 -1.67 1.37 -154.73 -0.21 -1.88 16 6 C -0.13 -1.69 9.16 37.16 0.34 -1.35 16 7 C 0.04 0.83 6.58 -2.77 -0.02 0.82 16 8 N -0.48 -10.79 6.17 -239.48 -1.48 -12.27 16 9 C 0.16 4.23 4.58 -4.98 -0.02 4.20 16 10 C -0.51 -14.64 8.84 -34.44 -0.30 -14.94 16 11 H 0.06 1.74 7.80 -52.49 -0.41 1.33 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 14 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.02 0.42 6.90 -2.77 -0.02 0.40 16 19 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 20 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 21 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.07 0.79 7.85 -51.92 -0.41 0.38 16 24 H 0.07 0.86 7.94 -51.93 -0.41 0.45 16 25 H 0.08 1.57 7.60 -51.93 -0.39 1.18 16 26 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 27 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.00 0.02 7.69 -51.93 -0.40 -0.38 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.09 1.70 7.41 -51.93 -0.38 1.31 16 31 H 0.08 1.31 7.75 -51.93 -0.40 0.91 16 LS Contribution 267.65 15.07 4.03 4.03 Total: -1.00 -32.20 267.65 -5.91 -38.11 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -4.48 Total: -3.90 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 0.98 Total: -1.01 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.74 Total: -38.29 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.69 Total: -15.77 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.20 -5.91 -38.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591631294.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.591 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds