Wall clock time and date at job start Sun Mar 29 2020 22:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99650 * 2 1 4 4 O 1.20828 * 120.00167 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99879 * 179.97438 * 3 2 1 6 6 C 1.52999 * 113.01264 * 311.64211 * 5 3 2 7 7 C 1.53932 * 113.73186 * 83.27635 * 5 3 2 8 8 N 1.47959 * 86.18045 * 90.63955 * 7 5 3 9 9 C 1.46902 * 110.99905 * 137.58303 * 8 7 5 10 10 C 1.50699 * 109.47319 * 70.64321 * 9 8 7 11 11 H 1.07998 * 119.99582 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00183 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99663 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00028 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47291 * 59.99724 * 14 12 10 16 16 H 1.48500 * 109.47087 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47356 * 299.99700 * 14 12 10 18 18 C 1.47957 * 90.76368 * 24.69138 * 8 7 5 19 19 H 1.08991 * 109.47372 * 299.99632 * 1 2 3 20 20 H 1.09004 * 109.46888 * 59.99955 * 1 2 3 21 21 H 1.09003 * 109.46665 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47019 * 288.36312 * 6 5 3 23 23 H 1.09007 * 109.47031 * 48.35697 * 6 5 3 24 24 H 1.09000 * 109.47575 * 168.35814 * 6 5 3 25 25 H 1.09004 * 113.75969 * 204.95751 * 7 5 3 26 26 H 1.08999 * 113.76302 * 336.32207 * 7 5 3 27 27 H 1.09007 * 109.46697 * 190.64055 * 9 8 7 28 28 H 1.09001 * 109.46915 * 310.63777 * 9 8 7 29 29 H 0.97007 * 119.99712 * 180.02562 * 13 12 10 30 30 H 1.09000 * 113.75975 * 220.99328 * 18 8 7 31 31 H 1.08998 * 113.76273 * 89.62912 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.2122 0.3721 1.0534 7 6 4.1942 1.1424 -1.3986 8 7 4.0923 2.6164 -1.4756 9 6 5.3090 3.1985 -2.0576 10 6 5.3724 2.8657 -3.5260 11 1 4.5876 2.2799 -3.9812 12 6 6.4329 3.3080 -4.2880 13 7 7.3888 4.0209 -3.7335 14 14 6.5118 2.8948 -6.1080 15 1 5.3192 3.4529 -6.7945 16 1 7.7417 3.4833 -6.6963 17 1 6.5370 1.4200 -6.2801 18 6 4.1113 2.7146 0.0006 19 1 -0.3633 0.5137 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 4.0339 0.7861 2.0458 23 1 3.7774 -0.6257 0.9925 24 1 5.2853 0.3124 0.8720 25 1 5.2197 0.7731 -1.3866 26 1 3.5613 0.6204 -2.1163 27 1 5.2903 4.2811 -1.9309 28 1 6.1846 2.7889 -1.5539 29 1 8.1347 4.3325 -4.2697 30 1 3.4121 3.4488 0.4009 31 1 5.1125 2.8052 0.4219 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591631294.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:06 Heat of formation + Delta-G solvation = -76.926463 kcal Electronic energy + Delta-G solvation = -14481.154700 eV Core-core repulsion = 11955.954236 eV Total energy + Delta-G solvation = -2525.200464 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.17193 -40.13959 -37.39568 -35.23344 -33.06588 -29.50053 -28.63893 -27.19859 -26.14269 -24.28146 -22.35523 -20.42057 -18.60509 -18.22628 -17.59819 -17.42864 -16.75417 -15.86261 -15.67861 -15.42480 -14.50090 -14.25182 -14.07923 -13.75973 -13.47551 -13.27352 -13.01778 -12.86007 -12.80304 -12.47117 -12.33580 -11.77992 -11.63357 -11.55246 -11.33719 -11.18117 -10.65489 -9.53501 -8.24419 -6.35176 1.12720 1.39320 1.42683 1.50765 1.67301 2.38330 3.07401 3.13305 3.23371 3.67003 3.91611 4.30941 4.33420 4.35634 4.46826 4.61342 4.66886 4.71661 4.75100 4.85059 4.95488 5.00523 5.09701 5.24276 5.35774 5.51432 5.76273 6.09397 6.38574 6.74218 6.78823 7.34670 8.86977 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044433 B = 0.007428 C = 0.006968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.013993 B = 3768.547298 C = 4017.227103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.494 3.506 4 O -0.528 6.528 5 C -0.083 4.083 6 C -0.127 4.127 7 C 0.043 3.957 8 N -0.504 5.504 9 C 0.176 3.824 10 C -0.533 4.533 11 H 0.057 0.943 12 C 0.006 3.994 13 N -0.930 5.930 14 Si 0.969 3.031 15 H -0.273 1.273 16 H -0.279 1.279 17 H -0.264 1.264 18 C 0.021 3.979 19 H 0.065 0.935 20 H 0.053 0.947 21 H 0.137 0.863 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.000 1.000 28 H -0.012 1.012 29 H 0.266 0.734 30 H 0.084 0.916 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 -10.732 9.040 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.338 3.662 4 O -0.416 6.416 5 C -0.085 4.085 6 C -0.185 4.185 7 C -0.086 4.086 8 N -0.227 5.227 9 C 0.049 3.951 10 C -0.571 4.571 11 H 0.075 0.925 12 C -0.193 4.193 13 N -0.570 5.570 14 Si 0.793 3.207 15 H -0.199 1.199 16 H -0.204 1.204 17 H -0.188 1.188 18 C -0.108 4.108 19 H 0.084 0.916 20 H 0.072 0.928 21 H 0.155 0.845 22 H 0.096 0.904 23 H 0.104 0.896 24 H 0.097 0.903 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.018 0.982 28 H 0.005 0.995 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.989 -10.033 8.616 15.990 hybrid contribution 0.736 0.205 -0.654 1.006 sum -8.253 -9.828 7.962 15.103 Atomic orbital electron populations 1.23575 0.74763 1.05850 1.02362 1.86475 1.24942 1.32104 1.83743 1.22997 0.90925 0.81286 0.71016 1.90626 1.67326 1.37585 1.46073 1.22074 0.87768 0.98918 0.99737 1.21753 1.01249 0.98987 0.96483 1.23762 1.00418 0.91320 0.93132 1.68576 1.37394 1.07614 1.09078 1.19884 0.86214 0.94075 0.94922 1.21349 1.06915 1.34081 0.94722 0.92516 1.25890 0.94951 0.94703 1.03747 1.70064 1.11537 1.37219 1.38203 0.85445 0.77502 0.78993 0.78745 1.19860 1.20448 1.18846 1.23973 1.00798 0.94903 0.91081 0.91602 0.92790 0.84463 0.90380 0.89624 0.90263 0.89592 0.90356 0.98230 0.99469 0.92488 0.89779 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.36 -9.59 10.18 -51.41 -0.52 -10.11 16 3 C 0.49 16.35 6.95 71.24 0.50 16.84 16 4 O -0.53 -20.74 15.64 21.96 0.34 -20.40 16 5 C -0.08 -2.64 1.37 -52.28 -0.07 -2.71 16 6 C -0.13 -2.84 9.16 71.98 0.66 -2.18 16 7 C 0.04 1.62 6.58 86.40 0.57 2.19 16 8 N -0.50 -23.24 6.17 -911.57 -5.62 -28.86 16 9 C 0.18 9.60 4.58 85.56 0.39 9.99 16 10 C -0.53 -30.93 8.84 25.60 0.23 -30.70 16 11 H 0.06 3.27 7.80 -2.91 -0.02 3.24 16 12 C 0.01 0.33 5.46 84.65 0.46 0.79 16 13 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 14 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 15 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 18 C 0.02 0.79 6.90 86.41 0.60 1.39 16 19 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 20 H 0.05 1.17 8.13 -2.38 -0.02 1.15 16 21 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.08 1.65 7.85 -2.38 -0.02 1.64 16 24 H 0.08 1.68 7.94 -2.39 -0.02 1.66 16 25 H 0.09 3.21 7.60 -2.38 -0.02 3.19 16 26 H 0.08 2.96 8.09 -2.39 -0.02 2.94 16 27 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 28 H -0.01 -0.69 7.69 -2.39 -0.02 -0.71 16 29 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 30 H 0.08 3.21 7.41 -2.39 -0.02 3.19 16 31 H 0.09 3.02 7.75 -2.39 -0.02 3.01 16 Total: -1.00 -69.73 267.65 2.13 -67.60 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 1.10 Total: 3.58 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 4.52 Total: -2.65 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -5.34 Total: -84.68 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.18 Total: -30.51 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -69.73 2.13 -67.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591631294.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.328 kcal (2) G-P(sol) polarization free energy of solvation -69.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds