Wall clock time and date at job start Sun Mar 29 2020 21:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99857 * 2 1 4 4 H 1.48501 * 109.47281 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47334 * 300.00222 * 3 2 1 6 6 H 1.48500 * 109.47304 * 59.99705 * 3 2 1 7 7 C 1.37878 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99800 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00111 * 359.97438 * 7 2 1 10 10 S 1.81397 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.81401 * 102.99785 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47149 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 C 1.35348 * 126.91385 * 274.68843 * 13 12 11 15 15 N 1.33775 * 106.49941 * 179.90531 * 14 13 12 16 16 N 1.28635 * 108.88364 * 0.36095 * 15 14 13 17 17 N 1.28722 * 110.17899 * 359.77279 * 16 15 14 18 18 H 0.97000 * 125.86571 * 180.02562 * 17 16 15 19 19 H 0.96993 * 120.00403 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.46640 * 60.00582 * 9 7 2 21 21 H 1.09000 * 109.47094 * 300.01049 * 9 7 2 22 22 H 1.09002 * 109.47085 * 299.99903 * 11 10 9 23 23 H 1.09001 * 109.47417 * 60.00029 * 11 10 9 24 24 H 1.09002 * 109.47153 * 299.99990 * 12 11 10 25 25 H 1.08998 * 109.47533 * 59.99620 * 12 11 10 26 26 H 1.08003 * 126.75270 * 0.03050 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 16 2.4300 -3.8779 -0.0005 11 6 1.3518 -5.3366 -0.0013 12 6 2.2086 -6.6042 -0.0020 13 6 1.3130 -7.8161 -0.0021 14 6 0.7591 -8.4176 1.0765 15 7 0.0427 -9.4471 0.6112 16 7 0.1523 -9.4854 -0.6699 17 7 0.9053 -8.5253 -1.0800 18 1 1.1398 -8.3416 -2.0031 19 1 -0.4850 0.8399 0.0004 20 1 0.6243 -2.5567 -0.8904 21 1 0.6247 -2.5571 0.8896 22 1 0.7223 -5.3237 0.8885 23 1 0.7229 -5.3232 -0.8915 24 1 2.8378 -6.6169 -0.8921 25 1 2.8379 -6.6179 0.8878 26 1 0.8715 -8.1230 2.1095 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594903539.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:30 Heat of formation + Delta-G solvation = 72.427779 kcal Electronic energy + Delta-G solvation = -11220.827834 eV Core-core repulsion = 9041.316383 eV Total energy + Delta-G solvation = -2179.511450 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.38021 -34.66832 -33.23805 -33.20591 -29.70506 -28.60623 -24.50427 -23.10753 -22.90333 -21.55526 -18.31049 -16.64324 -16.19496 -15.44225 -14.97882 -14.85178 -14.20497 -14.04276 -12.79480 -12.48401 -12.40217 -12.32294 -11.82598 -11.44770 -10.98185 -10.89810 -10.71718 -10.66641 -10.04957 -9.65888 -9.21478 -8.99286 -8.67997 -6.82863 -6.25487 -4.30224 1.42429 2.36900 2.50465 2.71502 3.21008 3.28574 3.34215 3.73811 4.30177 4.41874 4.64192 4.87208 5.04449 5.11879 5.19904 5.36316 5.54756 5.88571 5.99413 6.06024 6.71167 7.00773 7.03247 7.69022 7.93698 8.33782 8.72050 9.33486 10.85824 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.087422 B = 0.005042 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.210000 B = 5552.264195 C = 5680.515709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.513 4.513 8 H 0.068 0.932 9 C 0.093 3.907 10 S -0.304 6.304 11 C -0.089 4.089 12 C -0.030 4.030 13 C 0.004 3.996 14 C -0.048 4.048 15 N -0.268 5.268 16 N -0.088 5.088 17 N -0.390 5.390 18 H 0.448 0.552 19 H 0.266 0.734 20 H 0.035 0.965 21 H 0.037 0.963 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.103 0.897 26 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.221 -11.978 -1.033 12.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.553 4.553 8 H 0.086 0.914 9 C -0.054 4.054 10 S -0.077 6.077 11 C -0.238 4.238 12 C -0.070 4.070 13 C -0.132 4.132 14 C -0.205 4.205 15 N -0.135 5.135 16 N -0.068 5.068 17 N -0.111 5.111 18 H 0.293 0.707 19 H 0.075 0.925 20 H 0.054 0.946 21 H 0.055 0.945 22 H 0.098 0.902 23 H 0.090 0.910 24 H 0.104 0.896 25 H 0.122 0.878 26 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.253 -13.099 -1.308 13.560 hybrid contribution -0.279 1.975 -0.312 2.019 sum 2.974 -11.124 -1.620 11.628 Atomic orbital electron populations 1.69958 1.06169 1.27342 1.49587 1.24977 0.94981 0.99353 0.94595 0.86287 0.80075 0.82470 0.77784 1.19380 1.20726 1.20677 1.20711 0.93514 0.88673 1.52372 0.91354 1.21064 0.93495 0.90678 1.00157 1.86599 1.20987 1.02017 1.98078 1.23198 1.00536 0.95333 1.04717 1.19910 0.94985 0.86634 1.05466 1.22403 1.04297 0.99188 0.87316 1.23456 1.00642 0.95706 1.00677 1.75078 1.18712 1.18794 1.00911 1.78261 1.11731 1.09291 1.07562 1.45137 1.34070 1.20728 1.11142 0.70689 0.92478 0.94643 0.94492 0.90171 0.91050 0.89599 0.87818 0.79119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 13.29 55.43 0.74 -24.81 15 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 15 3 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 15 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.28 -6.40 7.11 56.52 0.40 -5.99 15 7 C -0.51 -14.10 9.13 -34.44 -0.31 -14.41 15 8 H 0.07 1.88 7.71 -52.49 -0.40 1.47 15 9 C 0.09 2.33 5.70 36.01 0.21 2.53 15 10 S -0.30 -6.04 21.66 -107.50 -2.33 -8.37 15 11 C -0.09 -1.30 5.92 37.16 0.22 -1.08 15 12 C -0.03 -0.32 5.79 -27.89 -0.16 -0.48 15 13 C 0.00 0.04 6.56 -82.09 -0.54 -0.50 15 14 C -0.05 -0.57 11.99 -17.74 -0.21 -0.79 15 15 N -0.27 -3.86 12.41 30.24 0.38 -3.48 15 16 N -0.09 -1.19 13.38 60.35 0.81 -0.38 15 17 N -0.39 -4.09 6.98 33.54 0.23 -3.86 15 18 H 0.45 3.09 8.96 -190.40 -1.71 1.39 15 19 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 20 H 0.04 0.93 8.14 -51.92 -0.42 0.50 15 21 H 0.04 0.97 8.14 -51.92 -0.42 0.54 15 22 H 0.08 1.19 8.14 -51.92 -0.42 0.76 15 23 H 0.07 1.05 8.14 -51.92 -0.42 0.62 15 24 H 0.09 0.84 8.14 -51.93 -0.42 0.42 15 25 H 0.10 1.06 8.14 -51.93 -0.42 0.63 15 26 H 0.19 1.79 8.06 -52.48 -0.42 1.37 15 LS Contribution 251.01 15.07 3.78 3.78 Total: -1.00 -30.94 251.01 -6.52 -37.46 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -4.21 Total: -3.22 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -0.90 Total: -13.04 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 2.15 Total: -32.53 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -6.04 SS G_CDS: -2.33 Total: -8.37 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.94 -6.52 -37.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903539.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.888 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds