Wall clock time and date at job start Sun Mar 29 2020 21:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35448 * 126.77788 * 2 1 4 4 C 1.41386 * 103.98620 * 180.10275 * 3 2 1 5 5 C 1.50700 * 126.80324 * 179.89385 * 4 3 2 6 6 S 1.81394 * 109.46854 * 269.70988 * 5 4 3 7 7 C 1.81399 * 102.99894 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47147 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00275 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99908 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99697 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99899 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47454 * 59.99701 * 12 10 8 14 14 H 1.48496 * 109.47112 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46926 * 299.99492 * 12 10 8 16 16 N 1.30178 * 106.39439 * 359.62810 * 4 3 2 17 17 O 1.20930 * 111.60085 * 0.24325 * 16 4 3 18 18 H 1.09000 * 109.47446 * 180.29522 * 1 2 3 19 19 H 1.09003 * 109.46652 * 300.29516 * 1 2 3 20 20 H 1.09001 * 109.47435 * 60.29371 * 1 2 3 21 21 H 1.08002 * 128.00740 * 359.97252 * 3 2 1 22 22 H 1.09002 * 109.46755 * 149.70913 * 5 4 3 23 23 H 1.08998 * 109.46859 * 29.70679 * 5 4 3 24 24 H 1.09001 * 109.47190 * 299.99732 * 7 6 5 25 25 H 1.09004 * 109.47089 * 59.99865 * 7 6 5 26 26 H 0.97006 * 119.99823 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6214 0.5372 -0.0025 5 6 4.9211 1.2999 -0.0057 6 16 5.4432 1.5973 -1.7173 7 6 6.9973 2.5113 -1.5168 8 6 7.5667 2.8376 -2.8734 9 1 7.0456 2.5268 -3.7668 10 6 8.7530 3.5332 -2.9740 11 7 9.3873 3.9122 -1.8860 12 14 9.4584 3.9384 -4.6555 13 1 8.4890 4.7714 -5.4115 14 1 10.7307 4.6864 -4.4914 15 1 9.7162 2.6798 -5.4005 16 7 3.4764 -0.7565 0.0045 17 8 2.3094 -1.0736 0.0059 18 1 -0.3634 -1.0276 0.0053 19 1 -0.3633 0.5184 0.8874 20 1 -0.3634 0.5093 -0.8926 21 1 2.0345 2.1271 -0.0004 22 1 5.6847 0.7187 0.5113 23 1 4.7838 2.2539 0.5032 24 1 6.8076 3.4350 -0.9702 25 1 7.7092 1.9002 -0.9618 26 1 10.2217 4.4018 -1.9568 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594903780.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:59 Heat of formation + Delta-G solvation = 43.857254 kcal Electronic energy + Delta-G solvation = -11304.555475 eV Core-core repulsion = 9091.512362 eV Total energy + Delta-G solvation = -2213.043112 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.79737 -34.64873 -33.37074 -33.16076 -28.77288 -28.32403 -27.77183 -23.23237 -22.84229 -20.09280 -17.57196 -17.13596 -16.48007 -15.34233 -14.60452 -14.52270 -14.00157 -13.43668 -13.28963 -13.07644 -12.69199 -12.44407 -12.23850 -11.99332 -11.00434 -10.88277 -10.83996 -10.43733 -9.73096 -9.49022 -9.20927 -8.88017 -8.62238 -6.73672 -6.20646 -4.25090 1.52321 1.98246 3.03346 3.19443 3.28077 3.30961 3.35729 3.78736 4.31624 4.35140 4.49515 5.04735 5.16467 5.17440 5.22254 5.32232 5.55671 5.61358 5.84338 5.90325 6.15854 7.06358 7.08338 7.73569 7.98893 8.42611 8.76284 9.37898 10.90651 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.082281 B = 0.005472 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.216046 B = 5116.115322 C = 5210.946489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.044 4.044 3 C -0.220 4.220 4 C 0.048 3.952 5 C -0.020 4.020 6 S -0.284 6.284 7 C 0.090 3.910 8 C -0.513 4.513 9 H 0.067 0.933 10 C 0.066 3.934 11 N -0.893 5.893 12 Si 0.908 3.092 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.273 1.273 16 N -0.357 5.357 17 O 0.099 5.901 18 H 0.080 0.920 19 H 0.087 0.913 20 H 0.089 0.911 21 H 0.171 0.829 22 H 0.090 0.910 23 H 0.096 0.904 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.220 -4.478 5.078 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.108 4.108 3 C -0.242 4.242 4 C -0.111 4.111 5 C -0.169 4.169 6 S -0.058 6.058 7 C -0.057 4.057 8 C -0.553 4.553 9 H 0.085 0.915 10 C -0.138 4.138 11 N -0.531 5.531 12 Si 0.735 3.265 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.199 1.199 16 N -0.061 5.061 17 O 0.031 5.969 18 H 0.099 0.901 19 H 0.106 0.894 20 H 0.107 0.893 21 H 0.189 0.811 22 H 0.109 0.891 23 H 0.114 0.886 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.699 -5.718 4.247 16.334 hybrid contribution 0.825 1.477 0.307 1.719 sum -13.875 -4.241 4.554 15.207 Atomic orbital electron populations 1.20288 0.84171 1.04393 1.03943 1.24435 0.96292 0.86338 1.03710 1.22379 0.91156 1.01102 1.09565 1.22859 0.96267 0.89772 1.02195 1.21463 0.93506 1.01100 1.00786 1.86877 1.35580 1.76547 1.06837 1.21107 0.87444 0.95752 1.01412 1.20621 1.06866 1.36793 0.90995 0.91489 1.24963 0.96176 0.95139 0.97537 1.69945 1.17035 1.38215 1.27905 0.86388 0.78211 0.78715 0.83211 1.19875 1.21017 1.19868 1.73857 0.96525 1.16252 1.19497 1.84821 1.11335 1.33141 1.67555 0.90082 0.89392 0.89276 0.81108 0.89100 0.88576 0.94401 0.94439 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.45 36.00 0.38 -0.10 15 2 C -0.04 -0.53 7.49 -35.31 -0.26 -0.80 15 3 C -0.22 -3.02 11.06 -39.38 -0.44 -3.45 15 4 C 0.05 0.82 6.59 -82.10 -0.54 0.28 15 5 C -0.02 -0.37 6.53 36.01 0.24 -0.14 15 6 S -0.28 -6.47 21.64 -107.50 -2.33 -8.79 15 7 C 0.09 2.36 5.70 36.01 0.21 2.57 15 8 C -0.51 -14.68 9.13 -34.44 -0.31 -14.99 15 9 H 0.07 1.92 7.71 -52.49 -0.40 1.51 15 10 C 0.07 1.86 5.46 -17.82 -0.10 1.76 15 11 N -0.89 -26.10 13.29 55.43 0.74 -25.36 15 12 Si 0.91 21.54 29.54 -169.99 -5.02 16.51 15 13 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 16 N -0.36 -6.34 12.07 33.43 0.40 -5.93 15 17 O 0.10 1.49 11.20 17.18 0.19 1.68 15 18 H 0.08 0.45 8.14 -51.93 -0.42 0.02 15 19 H 0.09 0.44 8.14 -51.93 -0.42 0.02 15 20 H 0.09 0.51 8.14 -51.93 -0.42 0.08 15 21 H 0.17 1.93 8.06 -52.49 -0.42 1.51 15 22 H 0.09 1.66 8.14 -51.92 -0.42 1.23 15 23 H 0.10 1.58 8.14 -51.93 -0.42 1.15 15 24 H 0.04 1.02 8.14 -51.92 -0.42 0.59 15 25 H 0.04 1.03 8.14 -51.92 -0.42 0.60 15 26 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 LS Contribution 252.52 15.07 3.81 3.81 Total: -1.00 -31.45 252.52 -5.97 -37.42 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: -2.92 Total: -4.47 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -0.84 Total: -14.86 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 1.14 Total: -31.29 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.19 Total: 1.68 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -6.47 SS G_CDS: -2.33 Total: -8.79 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.45 -5.97 -37.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903780.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.274 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds