Wall clock time and date at job start Sun Mar 29 2020 21:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35448 * 126.77788 * 2 1 4 4 C 1.41386 * 103.98620 * 180.10275 * 3 2 1 5 5 C 1.50700 * 126.80324 * 179.89385 * 4 3 2 6 6 S 1.81394 * 109.46854 * 269.70988 * 5 4 3 7 7 C 1.81399 * 102.99894 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47147 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00275 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99908 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99697 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99899 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47454 * 59.99701 * 12 10 8 14 14 H 1.48496 * 109.47112 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46926 * 299.99492 * 12 10 8 16 16 N 1.30178 * 106.39439 * 359.62810 * 4 3 2 17 17 O 1.20930 * 111.60085 * 0.24325 * 16 4 3 18 18 H 1.09000 * 109.47446 * 180.29522 * 1 2 3 19 19 H 1.09003 * 109.46652 * 300.29516 * 1 2 3 20 20 H 1.09001 * 109.47435 * 60.29371 * 1 2 3 21 21 H 1.08002 * 128.00740 * 359.97252 * 3 2 1 22 22 H 1.09002 * 109.46755 * 149.70913 * 5 4 3 23 23 H 1.08998 * 109.46859 * 29.70679 * 5 4 3 24 24 H 1.09001 * 109.47190 * 299.99732 * 7 6 5 25 25 H 1.09004 * 109.47089 * 59.99865 * 7 6 5 26 26 H 0.97006 * 119.99823 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6214 0.5372 -0.0025 5 6 4.9211 1.2999 -0.0057 6 16 5.4432 1.5973 -1.7173 7 6 6.9973 2.5113 -1.5168 8 6 7.5667 2.8376 -2.8734 9 1 7.0456 2.5268 -3.7668 10 6 8.7530 3.5332 -2.9740 11 7 9.3873 3.9122 -1.8860 12 14 9.4584 3.9384 -4.6555 13 1 8.4890 4.7714 -5.4115 14 1 10.7307 4.6864 -4.4914 15 1 9.7162 2.6798 -5.4005 16 7 3.4764 -0.7565 0.0045 17 8 2.3094 -1.0736 0.0059 18 1 -0.3634 -1.0276 0.0053 19 1 -0.3633 0.5184 0.8874 20 1 -0.3634 0.5093 -0.8926 21 1 2.0345 2.1271 -0.0004 22 1 5.6847 0.7187 0.5113 23 1 4.7838 2.2539 0.5032 24 1 6.8076 3.4350 -0.9702 25 1 7.7092 1.9002 -0.9618 26 1 10.2217 4.4018 -1.9568 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594903780.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:59 Heat of formation + Delta-G solvation = 24.639987 kcal Electronic energy + Delta-G solvation = -11305.388798 eV Core-core repulsion = 9091.512362 eV Total energy + Delta-G solvation = -2213.876436 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.99180 -35.87063 -35.32507 -34.31680 -30.77133 -29.89689 -28.57417 -25.27937 -24.11880 -21.26229 -18.81673 -18.65691 -18.21009 -17.20276 -16.40166 -15.76655 -15.24034 -14.79354 -14.56044 -14.44571 -14.07984 -13.91112 -13.72162 -13.18431 -12.73899 -12.69972 -12.32913 -12.10827 -11.70782 -11.08654 -10.76796 -10.70334 -10.25112 -8.59573 -8.36096 -6.49927 0.26627 0.72708 1.38803 1.42415 1.49925 1.60520 1.90803 2.25445 2.35291 2.98544 3.03613 3.43311 4.08258 4.12531 4.21233 4.47365 4.56703 4.79648 4.89109 4.89705 4.92754 4.97273 5.29077 5.53484 5.84040 6.56611 7.18164 7.29397 8.75768 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.082281 B = 0.005472 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.216046 B = 5116.115322 C = 5210.946489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.025 4.025 3 C -0.231 4.231 4 C 0.021 3.979 5 C -0.006 4.006 6 S -0.296 6.296 7 C 0.094 3.906 8 C -0.540 4.540 9 H 0.061 0.939 10 C 0.016 3.984 11 N -0.924 5.924 12 Si 0.978 3.022 13 H -0.264 1.264 14 H -0.274 1.274 15 H -0.268 1.268 16 N -0.391 5.391 17 O 0.098 5.902 18 H 0.096 0.904 19 H 0.113 0.887 20 H 0.106 0.894 21 H 0.194 0.806 22 H 0.086 0.914 23 H 0.115 0.885 24 H 0.023 0.977 25 H 0.015 0.985 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.005 -4.329 4.638 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 C -0.254 4.254 4 C -0.137 4.137 5 C -0.154 4.154 6 S -0.070 6.070 7 C -0.053 4.053 8 C -0.579 4.579 9 H 0.080 0.920 10 C -0.185 4.185 11 N -0.562 5.562 12 Si 0.801 3.199 13 H -0.189 1.189 14 H -0.199 1.199 15 H -0.193 1.193 16 N -0.095 5.095 17 O 0.030 5.970 18 H 0.115 0.885 19 H 0.131 0.869 20 H 0.125 0.875 21 H 0.212 0.788 22 H 0.104 0.896 23 H 0.134 0.866 24 H 0.042 0.958 25 H 0.033 0.967 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.484 -5.569 3.811 17.812 hybrid contribution 1.226 1.359 0.539 1.907 sum -15.258 -4.211 4.350 16.416 Atomic orbital electron populations 1.20610 0.80026 1.06139 1.05889 1.25363 0.98195 0.84748 1.00542 1.22688 0.89741 1.02760 1.10200 1.22869 0.96787 0.90075 1.03928 1.21414 0.94364 1.02395 0.97242 1.86695 1.33253 1.75790 1.11308 1.20796 0.89086 0.95190 1.00249 1.20936 1.07754 1.37636 0.91586 0.92048 1.25918 0.96292 0.94544 1.01741 1.70046 1.17479 1.38524 1.30185 0.85307 0.77763 0.78732 0.78127 1.18903 1.19893 1.19299 1.73849 0.98114 1.16816 1.20765 1.84774 1.10907 1.34215 1.67096 0.88519 0.86885 0.87530 0.78836 0.89573 0.86623 0.95825 0.96684 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.45 71.24 0.74 0.09 15 2 C -0.02 -0.53 7.49 25.04 0.19 -0.34 15 3 C -0.23 -5.87 11.06 22.40 0.25 -5.63 15 4 C 0.02 0.71 6.59 43.58 0.29 1.00 15 5 C -0.01 -0.22 6.53 71.24 0.47 0.25 15 6 S -0.30 -13.69 21.64 -56.49 -1.22 -14.91 15 7 C 0.09 5.13 5.70 71.24 0.41 5.53 15 8 C -0.54 -31.48 9.13 25.60 0.23 -31.24 15 9 H 0.06 3.56 7.71 -2.91 -0.02 3.54 15 10 C 0.02 0.92 5.46 84.66 0.46 1.38 15 11 N -0.92 -54.64 13.29 21.45 0.28 -54.36 15 12 Si 0.98 44.00 29.54 68.60 2.03 46.03 15 13 H -0.26 -11.45 7.11 99.48 0.71 -10.74 15 14 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 16 N -0.39 -13.71 12.07 -49.54 -0.60 -14.31 15 17 O 0.10 2.81 11.20 71.66 0.80 3.62 15 18 H 0.10 0.67 8.14 -2.39 -0.02 0.65 15 19 H 0.11 0.60 8.14 -2.39 -0.02 0.58 15 20 H 0.11 0.74 8.14 -2.39 -0.02 0.72 15 21 H 0.19 3.85 8.06 -2.91 -0.02 3.82 15 22 H 0.09 3.21 8.14 -2.39 -0.02 3.19 15 23 H 0.12 3.75 8.14 -2.39 -0.02 3.73 15 24 H 0.02 1.31 8.14 -2.39 -0.02 1.29 15 25 H 0.01 0.86 8.14 -2.39 -0.02 0.84 15 26 H 0.27 14.96 8.31 -92.70 -0.77 14.19 15 Total: -1.00 -68.71 252.52 5.49 -63.22 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: 1.17 Total: -0.32 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 3.03 Total: -28.97 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -0.31 Total: -68.67 kcal Atomic # 8 Polarization: 2.81 SS G_CDS: 0.80 Total: 3.62 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -13.69 SS G_CDS: -1.22 Total: -14.91 kcal Total: -68.71 5.49 -63.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903780.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.859 kcal (2) G-P(sol) polarization free energy of solvation -68.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds