Wall clock time and date at job start Sun Mar 29 2020 21:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99946 * 2 1 4 4 C 1.50697 * 109.46687 * 293.95278 * 3 2 1 5 5 H 1.07991 * 120.00735 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99572 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99897 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00143 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46905 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47253 * 119.99526 * 8 6 4 11 11 H 1.48497 * 109.47237 * 240.00017 * 8 6 4 12 12 C 1.46901 * 110.99843 * 123.95084 * 2 1 3 13 13 C 1.50700 * 109.47450 * 164.06568 * 12 2 1 14 14 C 1.28871 * 121.25014 * 96.04254 * 13 12 2 15 15 C 1.51424 * 117.50074 * 180.02562 * 14 13 12 16 16 S 1.83840 * 102.54098 * 16.28665 * 15 14 13 17 17 C 1.51421 * 121.25129 * 275.76813 * 13 12 2 18 18 H 1.09003 * 109.47483 * 301.15479 * 1 2 3 19 19 H 1.08995 * 109.47044 * 61.15704 * 1 2 3 20 20 H 1.09005 * 109.47177 * 181.15784 * 1 2 3 21 21 H 1.09004 * 109.46770 * 53.95291 * 3 2 1 22 22 H 1.09001 * 109.46884 * 173.94805 * 3 2 1 23 23 H 0.97001 * 119.99777 * 180.02562 * 7 6 4 24 24 H 1.09007 * 109.47329 * 284.06920 * 12 2 1 25 25 H 1.09008 * 109.46938 * 44.06479 * 12 2 1 26 26 H 1.08003 * 121.25329 * 359.97438 * 14 13 12 27 27 H 1.09002 * 110.79897 * 134.55030 * 15 14 13 28 28 H 1.08996 * 110.79677 * 257.83301 * 15 14 13 29 29 H 1.08998 * 110.79460 * 281.97488 * 17 13 12 30 30 H 1.09007 * 110.79366 * 45.44247 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0277 3.3491 -1.5289 7 7 2.7128 4.0015 -0.6154 8 14 1.5839 4.1864 -3.1387 9 1 0.8167 3.2437 -3.9919 10 1 0.7569 5.3879 -2.8602 11 1 2.8259 4.5929 -3.8440 12 6 1.9954 -0.7659 1.1376 13 6 3.4510 -1.0780 0.9028 14 6 4.3819 -0.3380 1.3992 15 6 5.8157 -0.7296 1.1093 16 16 5.6339 -1.8943 -0.3014 17 6 3.8745 -2.2764 0.0798 18 1 -0.3634 0.5317 0.8794 19 1 -0.3633 0.4957 -0.9001 20 1 -0.3634 -1.0275 0.0208 21 1 1.5611 1.9273 0.8309 22 1 3.0797 1.3444 0.1083 23 1 2.9874 4.9176 -0.7774 24 1 1.8924 -0.1785 2.0501 25 1 1.4362 -1.6961 1.2393 26 1 4.1484 0.5293 1.9989 27 1 6.4035 0.1412 0.8188 28 1 6.2627 -1.2266 1.9701 29 1 3.7924 -3.1942 0.6619 30 1 3.2873 -2.3440 -0.8361 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595895598.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:00 Heat of formation + Delta-G solvation = 20.217381 kcal Electronic energy + Delta-G solvation = -12335.841565 eV Core-core repulsion = 10257.606445 eV Total energy + Delta-G solvation = -2078.235120 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.84608 -35.19342 -32.47125 -29.45028 -27.45043 -27.13710 -24.53513 -23.39918 -20.33396 -18.03844 -16.50821 -16.16574 -15.08347 -14.96885 -14.35333 -13.87498 -13.71410 -13.14083 -12.97892 -12.40373 -11.99136 -11.70991 -11.40861 -11.25204 -10.95805 -10.87272 -10.64080 -10.49608 -10.12688 -9.85380 -9.17189 -8.71134 -8.41564 -7.45948 -7.28770 -6.01846 -4.02071 2.10109 2.22479 2.65046 3.31935 3.39436 3.44268 4.44532 4.80269 4.99156 5.18212 5.34850 5.44789 5.54506 5.62113 5.67828 5.86125 5.97915 6.01710 6.07631 6.31600 6.61717 6.69596 7.03731 7.29286 7.30742 7.80055 8.08420 8.17709 8.53678 9.04966 9.61745 11.09334 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.030685 B = 0.009123 C = 0.008039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.271978 B = 3068.465680 C = 3482.025355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.537 5.537 3 C 0.189 3.811 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.099 3.901 13 C -0.102 4.102 14 C -0.161 4.161 15 C -0.033 4.033 16 S -0.305 6.305 17 C -0.022 4.022 18 H 0.012 0.988 19 H 0.075 0.925 20 H 0.044 0.956 21 H -0.012 1.012 22 H 0.038 0.962 23 H 0.260 0.740 24 H 0.035 0.965 25 H 0.069 0.931 26 H 0.135 0.865 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 -9.840 4.857 11.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.262 5.262 3 C 0.064 3.936 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.031 4.031 13 C -0.104 4.104 14 C -0.181 4.181 15 C -0.180 4.180 16 S -0.078 6.078 17 C -0.169 4.169 18 H 0.031 0.969 19 H 0.094 0.906 20 H 0.063 0.937 21 H 0.006 0.994 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.087 0.913 26 H 0.153 0.847 27 H 0.124 0.876 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.528 -10.295 3.554 11.181 hybrid contribution -1.156 1.481 0.757 2.026 sum 1.371 -8.814 4.312 9.907 Atomic orbital electron populations 1.22204 0.88460 0.99108 1.01102 1.62108 1.06776 1.18255 1.39042 1.19833 0.96142 0.81137 0.96502 1.21180 1.34589 0.96851 1.01682 0.91911 1.24971 0.95315 0.97378 0.96928 1.69961 1.38534 1.11356 1.34019 0.86467 0.78173 0.79280 0.83670 1.19664 1.21168 1.20986 1.20854 0.90662 0.98083 0.93464 1.21270 0.96467 0.95115 0.97571 1.22457 0.92259 1.00254 1.03148 1.23031 0.98274 0.99882 0.96817 1.87857 1.17264 1.59113 1.43607 1.23001 0.92448 0.98626 1.02831 0.96937 0.90649 0.93676 0.99444 0.94377 0.93057 0.94702 0.91293 0.84736 0.87616 0.88668 0.88794 0.86945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.33 60.07 0.56 1.31 16 2 N -0.54 -11.45 4.70 -245.81 -1.16 -12.60 16 3 C 0.19 4.88 4.56 -4.98 -0.02 4.86 16 4 C -0.50 -14.26 8.53 -34.44 -0.29 -14.55 16 5 H 0.06 1.77 7.10 -52.49 -0.37 1.40 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 8 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 C 0.10 1.72 5.24 -4.98 -0.03 1.69 16 13 C -0.10 -1.72 5.01 -100.14 -0.50 -2.22 16 14 C -0.16 -2.66 8.51 -35.10 -0.30 -2.96 16 15 C -0.03 -0.48 7.46 36.36 0.27 -0.21 16 16 S -0.30 -5.00 23.55 -107.50 -2.53 -7.53 16 17 C -0.02 -0.33 7.32 36.36 0.27 -0.06 16 18 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 19 H 0.07 1.54 6.89 -51.93 -0.36 1.18 16 20 H 0.04 0.71 7.98 -51.93 -0.41 0.29 16 21 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 22 H 0.04 1.05 6.21 -51.93 -0.32 0.72 16 23 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.03 0.61 7.95 -51.93 -0.41 0.20 16 25 H 0.07 1.02 7.88 -51.92 -0.41 0.61 16 26 H 0.13 2.27 8.02 -52.48 -0.42 1.85 16 27 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 28 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 262.97 15.07 3.96 3.96 Total: -1.00 -30.31 262.97 -8.53 -38.84 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -4.38 Total: -2.87 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -0.14 Total: -10.65 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.42 Total: -38.62 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -5.00 SS G_CDS: -2.53 Total: -7.53 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.31 -8.53 -38.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595895598.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.058 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds