Wall clock time and date at job start Sun Mar 29 2020 21:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99946 * 2 1 4 4 C 1.50697 * 109.46687 * 293.95278 * 3 2 1 5 5 H 1.07991 * 120.00735 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99572 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99897 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00143 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46905 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47253 * 119.99526 * 8 6 4 11 11 H 1.48497 * 109.47237 * 240.00017 * 8 6 4 12 12 C 1.46901 * 110.99843 * 123.95084 * 2 1 3 13 13 C 1.50700 * 109.47450 * 164.06568 * 12 2 1 14 14 C 1.28871 * 121.25014 * 96.04254 * 13 12 2 15 15 C 1.51424 * 117.50074 * 180.02562 * 14 13 12 16 16 S 1.83840 * 102.54098 * 16.28665 * 15 14 13 17 17 C 1.51421 * 121.25129 * 275.76813 * 13 12 2 18 18 H 1.09003 * 109.47483 * 301.15479 * 1 2 3 19 19 H 1.08995 * 109.47044 * 61.15704 * 1 2 3 20 20 H 1.09005 * 109.47177 * 181.15784 * 1 2 3 21 21 H 1.09004 * 109.46770 * 53.95291 * 3 2 1 22 22 H 1.09001 * 109.46884 * 173.94805 * 3 2 1 23 23 H 0.97001 * 119.99777 * 180.02562 * 7 6 4 24 24 H 1.09007 * 109.47329 * 284.06920 * 12 2 1 25 25 H 1.09008 * 109.46938 * 44.06479 * 12 2 1 26 26 H 1.08003 * 121.25329 * 359.97438 * 14 13 12 27 27 H 1.09002 * 110.79897 * 134.55030 * 15 14 13 28 28 H 1.08996 * 110.79677 * 257.83301 * 15 14 13 29 29 H 1.08998 * 110.79460 * 281.97488 * 17 13 12 30 30 H 1.09007 * 110.79366 * 45.44247 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0277 3.3491 -1.5289 7 7 2.7128 4.0015 -0.6154 8 14 1.5839 4.1864 -3.1387 9 1 0.8167 3.2437 -3.9919 10 1 0.7569 5.3879 -2.8602 11 1 2.8259 4.5929 -3.8440 12 6 1.9954 -0.7659 1.1376 13 6 3.4510 -1.0780 0.9028 14 6 4.3819 -0.3380 1.3992 15 6 5.8157 -0.7296 1.1093 16 16 5.6339 -1.8943 -0.3014 17 6 3.8745 -2.2764 0.0798 18 1 -0.3634 0.5317 0.8794 19 1 -0.3633 0.4957 -0.9001 20 1 -0.3634 -1.0275 0.0208 21 1 1.5611 1.9273 0.8309 22 1 3.0797 1.3444 0.1083 23 1 2.9874 4.9176 -0.7774 24 1 1.8924 -0.1785 2.0501 25 1 1.4362 -1.6961 1.2393 26 1 4.1484 0.5293 1.9989 27 1 6.4035 0.1412 0.8188 28 1 6.2627 -1.2266 1.9701 29 1 3.7924 -3.1942 0.6619 30 1 3.2873 -2.3440 -0.8361 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595895598.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:00 Heat of formation + Delta-G solvation = 1.145209 kcal Electronic energy + Delta-G solvation = -12336.668596 eV Core-core repulsion = 10257.606445 eV Total energy + Delta-G solvation = -2079.062151 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.31322 -36.74085 -34.57869 -30.80116 -29.31245 -28.56993 -26.07718 -25.12710 -22.09326 -19.38281 -18.48763 -17.60483 -16.84917 -16.40140 -16.01812 -15.35786 -15.27789 -14.72609 -14.19098 -14.04176 -13.77326 -13.20517 -12.94805 -12.87124 -12.62075 -12.49498 -12.32730 -12.31637 -11.79480 -11.43124 -11.20897 -10.60346 -10.02185 -9.01113 -8.72937 -8.19936 -6.28188 0.88181 0.94135 1.38921 1.40447 1.41289 1.53385 2.40526 3.13474 3.44406 3.61575 3.77034 4.25998 4.38531 4.41821 4.48420 4.53396 4.62175 4.66324 4.72608 4.78833 5.11359 5.19748 5.28802 5.37483 5.64841 5.75662 6.07717 6.34300 6.63158 6.87790 7.40789 8.91223 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.030685 B = 0.009123 C = 0.008039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.271978 B = 3068.465680 C = 3482.025355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.547 5.547 3 C 0.207 3.793 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.932 5.932 8 Si 0.964 3.036 9 H -0.264 1.264 10 H -0.278 1.278 11 H -0.281 1.281 12 C 0.099 3.901 13 C -0.114 4.114 14 C -0.169 4.169 15 C -0.022 4.022 16 S -0.344 6.344 17 C -0.009 4.009 18 H 0.010 0.990 19 H 0.056 0.944 20 H 0.085 0.915 21 H -0.043 1.043 22 H 0.017 0.983 23 H 0.263 0.737 24 H 0.031 0.969 25 H 0.104 0.896 26 H 0.124 0.876 27 H 0.103 0.897 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.043 -10.920 4.574 11.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.271 5.271 3 C 0.080 3.920 4 C -0.560 4.560 5 H 0.078 0.922 6 C -0.196 4.196 7 N -0.573 5.573 8 Si 0.789 3.211 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.206 1.206 12 C -0.030 4.030 13 C -0.116 4.116 14 C -0.190 4.190 15 C -0.169 4.169 16 S -0.118 6.118 17 C -0.156 4.156 18 H 0.029 0.971 19 H 0.074 0.926 20 H 0.104 0.896 21 H -0.025 1.025 22 H 0.035 0.965 23 H 0.072 0.928 24 H 0.049 0.951 25 H 0.122 0.878 26 H 0.141 0.859 27 H 0.122 0.878 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.062 -11.395 3.276 12.035 hybrid contribution -1.026 1.792 0.905 2.255 sum 1.036 -9.603 4.181 10.525 Atomic orbital electron populations 1.22231 0.87011 1.01415 1.00063 1.61995 1.08199 1.15576 1.41337 1.19432 0.94674 0.83414 0.94437 1.21513 1.34524 0.97420 1.02524 0.92186 1.25848 0.95145 0.98135 1.00428 1.70077 1.39483 1.11778 1.35985 0.85417 0.78026 0.78306 0.79396 1.18805 1.20331 1.20638 1.20956 0.91500 0.98763 0.91783 1.21398 0.96150 0.95970 0.98033 1.22591 0.93549 0.99776 1.03038 1.23078 0.97224 0.99572 0.97007 1.87990 1.18771 1.59770 1.45247 1.23020 0.90778 0.99199 1.02605 0.97093 0.92561 0.89633 1.02503 0.96525 0.92834 0.95098 0.87808 0.85852 0.87823 0.85559 0.85527 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.49 9.33 127.69 1.19 2.68 16 2 N -0.55 -22.87 4.70 -931.61 -4.38 -27.25 16 3 C 0.21 10.88 4.56 85.56 0.39 11.27 16 4 C -0.52 -29.75 8.53 25.60 0.22 -29.53 16 5 H 0.06 3.38 7.10 -2.92 -0.02 3.36 16 6 C 0.00 0.13 5.46 84.66 0.46 0.60 16 7 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 8 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 9 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 C 0.10 3.28 5.24 85.56 0.45 3.73 16 13 C -0.11 -3.65 5.01 -14.13 -0.07 -3.73 16 14 C -0.17 -5.50 8.51 28.00 0.24 -5.26 16 15 C -0.02 -0.61 7.46 71.47 0.53 -0.08 16 16 S -0.34 -10.86 23.55 -56.49 -1.33 -12.20 16 17 C -0.01 -0.25 7.32 71.47 0.52 0.27 16 18 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 19 H 0.06 2.25 6.89 -2.39 -0.02 2.23 16 20 H 0.09 2.42 7.98 -2.38 -0.02 2.40 16 21 H -0.04 -2.45 8.12 -2.39 -0.02 -2.47 16 22 H 0.02 0.94 6.21 -2.39 -0.01 0.92 16 23 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 24 H 0.03 1.05 7.95 -2.38 -0.02 1.04 16 25 H 0.10 2.71 7.88 -2.38 -0.02 2.69 16 26 H 0.12 4.25 8.02 -2.91 -0.02 4.23 16 27 H 0.10 2.95 8.14 -2.39 -0.02 2.94 16 28 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 Total: -1.00 -64.85 262.97 1.64 -63.21 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.10 Total: 5.35 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 3.93 Total: -20.05 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -4.09 Total: -83.23 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: -10.86 SS G_CDS: -1.33 Total: -12.20 kcal Total: -64.85 1.64 -63.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595895598.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.357 kcal (2) G-P(sol) polarization free energy of solvation -64.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds