Wall clock time and date at job start Sun Mar 29 2020 21:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00180 * 2 1 4 4 H 1.48498 * 109.47394 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46869 * 300.00091 * 3 2 1 6 6 H 1.48496 * 109.46952 * 59.99933 * 3 2 1 7 7 C 1.37886 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99820 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99555 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46692 * 180.02562 * 9 7 2 11 11 N 1.46505 * 109.46943 * 180.02562 * 10 9 7 12 12 C 1.34783 * 119.99820 * 179.97438 * 11 10 9 13 13 O 1.21282 * 119.99991 * 0.02562 * 12 11 10 14 14 C 1.50693 * 119.99907 * 179.97438 * 12 11 10 15 15 H 1.09005 * 109.47158 * 305.00200 * 14 12 11 16 16 O 1.42897 * 109.47472 * 185.00322 * 14 12 11 17 17 C 1.53003 * 109.47251 * 64.99863 * 14 12 11 18 18 C 1.53000 * 117.49792 * 179.97438 * 17 14 12 19 19 C 1.53002 * 60.02940 * 107.48056 * 18 17 14 20 20 H 0.96995 * 119.99669 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47241 * 60.00354 * 9 7 2 22 22 H 1.09004 * 109.47075 * 299.99846 * 9 7 2 23 23 H 1.08993 * 109.47641 * 59.99851 * 10 9 7 24 24 H 1.09004 * 109.46862 * 299.99520 * 10 9 7 25 25 H 0.96997 * 120.00028 * 359.97438 * 11 10 9 26 26 H 0.96703 * 113.99927 * 300.00421 * 16 14 12 27 27 H 1.08999 * 115.54778 * 34.33310 * 17 14 12 28 28 H 1.09002 * 117.49833 * 214.98161 * 18 17 14 29 29 H 1.09002 * 117.49953 * 359.97438 * 18 17 14 30 30 H 1.09000 * 117.49996 * 107.50493 * 19 18 17 31 31 H 1.08999 * 117.49664 * 252.51862 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0981 -0.0018 13 8 3.3995 -6.0980 -0.0014 14 6 1.4333 -7.4031 -0.0018 15 1 0.7414 -7.4233 0.8403 16 8 2.3574 -8.4867 0.1149 17 6 0.6497 -7.5396 -1.3089 18 6 -0.1856 -8.8067 -1.5027 19 6 -0.8773 -7.4699 -1.2280 20 1 -0.4849 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8720 -3.6044 0.8894 24 1 2.8719 -3.6043 -0.8906 25 1 0.5428 -4.9308 -0.0011 26 1 3.0045 -8.5308 -0.6023 27 1 1.1278 -7.1125 -2.1904 28 1 -0.2576 -9.2126 -2.5118 29 1 -0.1766 -9.5433 -0.6993 30 1 -1.4044 -6.9964 -2.0563 31 1 -1.3231 -7.3269 -0.2437 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597491473.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:29 Heat of formation + Delta-G solvation = -80.604265 kcal Electronic energy + Delta-G solvation = -13901.568501 eV Core-core repulsion = 11376.208555 eV Total energy + Delta-G solvation = -2525.359945 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.85760 -37.54414 -35.63083 -34.68493 -32.86850 -30.06139 -27.69872 -24.56223 -22.52563 -21.63822 -21.00258 -20.30669 -17.66533 -16.85186 -16.36326 -15.60226 -15.26028 -14.61824 -14.39784 -13.95984 -13.76025 -13.07787 -12.92024 -12.32929 -11.82110 -11.62725 -11.22901 -11.07604 -10.85831 -10.73439 -10.63700 -10.38819 -10.35090 -9.76046 -9.40678 -9.07920 -8.58663 -8.39230 -6.11893 -4.14729 2.84466 3.26833 3.34375 3.39113 3.49077 3.56756 4.33841 4.39483 4.53167 4.69235 4.80038 5.02659 5.19355 5.25384 5.46607 5.48875 5.70991 5.92828 5.96896 6.29421 6.30929 6.69969 6.85983 7.44179 7.50460 7.58405 7.86285 7.95676 8.24677 8.55919 8.91470 9.50379 10.99775 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.050575 B = 0.005768 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.503282 B = 4853.225212 C = 5292.697477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.714 5.714 12 C 0.479 3.521 13 O -0.546 6.546 14 C 0.123 3.877 15 H 0.120 0.880 16 O -0.537 6.537 17 C -0.194 4.194 18 C -0.162 4.162 19 C -0.169 4.169 20 H 0.262 0.738 21 H 0.023 0.977 22 H 0.023 0.977 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.399 0.601 26 H 0.383 0.617 27 H 0.110 0.890 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 -14.263 -2.507 14.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.365 5.365 12 C 0.264 3.736 13 O -0.424 6.424 14 C 0.060 3.940 15 H 0.137 0.863 16 O -0.342 6.342 17 C -0.213 4.213 18 C -0.199 4.199 19 C -0.206 4.206 20 H 0.071 0.929 21 H 0.041 0.959 22 H 0.041 0.959 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.233 0.767 26 H 0.231 0.769 27 H 0.128 0.872 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.069 -14.254 -1.965 14.537 hybrid contribution 0.201 1.222 -0.546 1.353 sum -1.869 -13.032 -2.511 13.403 Atomic orbital electron populations 1.69962 1.06103 1.26797 1.50454 1.24998 0.94890 0.99432 0.94949 0.86456 0.80176 0.83306 0.77639 1.19576 1.20918 1.20901 1.21093 0.93286 0.90378 1.51271 0.92203 1.19331 0.94187 0.91120 0.97875 1.21754 0.96112 0.81573 1.00809 1.46342 1.10635 1.06516 1.73032 1.21362 0.88738 0.86426 0.77081 1.90688 1.13869 1.87608 1.50276 1.21375 0.90254 0.85118 0.97237 0.86257 1.86542 1.46920 1.47743 1.53009 1.22902 0.94209 1.04752 0.99424 1.22873 1.02875 0.91005 1.03126 1.23043 0.93015 1.00734 1.03848 0.92877 0.95893 0.95915 0.92505 0.92565 0.76741 0.76852 0.87153 0.88617 0.88212 0.88109 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.55 5.61 -4.04 -0.02 2.52 16 11 N -0.71 -12.31 5.52 -60.29 -0.33 -12.64 16 12 C 0.48 8.09 7.15 -10.99 -0.08 8.01 16 13 O -0.55 -11.35 16.32 -14.31 -0.23 -11.58 16 14 C 0.12 1.56 3.57 -27.88 -0.10 1.46 16 15 H 0.12 1.35 7.90 -51.93 -0.41 0.94 16 16 O -0.54 -7.14 12.90 -55.09 -0.71 -7.86 16 17 C -0.19 -2.05 5.32 -90.58 -0.48 -2.53 16 18 C -0.16 -1.42 10.15 -26.73 -0.27 -1.69 16 19 C -0.17 -1.52 10.18 -26.69 -0.27 -1.80 16 20 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 21 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.40 5.94 8.47 -40.82 -0.35 5.59 16 26 H 0.38 4.31 8.79 45.56 0.40 4.71 16 27 H 0.11 1.24 8.11 -51.93 -0.42 0.82 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.10 0.82 8.05 -51.93 -0.42 0.40 16 LS Contribution 274.90 15.07 4.14 4.14 Total: -1.00 -31.83 274.90 -6.89 -38.72 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -3.69 Total: 5.25 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.78 Total: -7.05 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.40 Total: -37.90 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.94 Total: -19.44 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.83 -6.89 -38.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597491473.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.885 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds