Wall clock time and date at job start Sun Mar 29 2020 21:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 120.00034 * 2 1 4 4 H 1.48506 * 109.46906 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47271 * 299.99998 * 3 2 1 6 6 H 1.48505 * 109.46946 * 60.00502 * 3 2 1 7 7 C 1.38951 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00088 * 179.97438 * 7 2 1 9 9 N 1.37105 * 119.99793 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00052 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99721 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00235 * 180.02562 * 10 9 7 13 13 C 1.52999 * 109.47144 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46811 * 179.97438 * 13 12 10 15 15 O 1.42901 * 112.84973 * 53.80409 * 14 13 12 16 16 C 1.53772 * 113.61475 * 282.49623 * 14 13 12 17 17 C 1.53781 * 87.08354 * 220.02318 * 16 14 13 18 18 C 1.53781 * 113.61135 * 184.99718 * 14 13 12 19 19 H 0.97006 * 119.99740 * 359.97438 * 1 2 3 20 20 H 0.96997 * 119.99818 * 0.02562 * 9 7 2 21 21 H 1.09009 * 109.47208 * 59.99839 * 12 10 9 22 22 H 1.09001 * 109.47093 * 300.00146 * 12 10 9 23 23 H 1.08992 * 109.47188 * 60.00163 * 13 12 10 24 24 H 1.08997 * 109.46828 * 299.99882 * 13 12 10 25 25 H 0.96698 * 114.00171 * 309.66692 * 15 14 13 26 26 H 1.09000 * 113.61922 * 334.57064 * 16 14 13 27 27 H 1.08999 * 113.61689 * 105.47008 * 16 14 13 28 28 H 1.09005 * 113.61134 * 270.88438 * 17 16 14 29 29 H 1.08994 * 113.62071 * 139.98148 * 17 16 14 30 30 H 1.09000 * 113.61578 * 254.52872 * 18 14 13 31 31 H 1.09003 * 113.61302 * 25.43614 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 6 2.2379 -6.0259 -0.0016 14 6 1.4728 -7.3509 -0.0016 15 8 0.5215 -7.4424 -1.0640 16 6 0.9012 -7.7321 1.3741 17 6 1.3147 -9.1791 1.0575 18 6 2.3804 -8.5862 0.1206 19 1 -0.4850 0.8401 0.0004 20 1 0.3533 -2.3906 -0.0005 21 1 0.6173 -4.9205 -0.8914 22 1 0.6166 -4.9209 0.8886 23 1 2.8645 -5.9686 0.8883 24 1 2.8645 -5.9677 -0.8916 25 1 -0.0676 -6.6786 -1.1313 26 1 1.4472 -7.2951 2.2102 27 1 -0.1770 -7.5933 1.4527 28 1 0.5448 -9.7493 0.5376 29 1 1.7321 -9.7110 1.9124 30 1 2.4963 -9.1370 -0.8128 31 1 3.3309 -8.3826 0.6140 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601026767.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:14 Heat of formation + Delta-G solvation = -83.336067 kcal Electronic energy + Delta-G solvation = -14109.116033 eV Core-core repulsion = 11583.637628 eV Total energy + Delta-G solvation = -2525.478405 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.73095 -38.03943 -34.57616 -34.03002 -31.95489 -31.13545 -26.47029 -25.65667 -24.34484 -21.74528 -19.59395 -19.06379 -17.84413 -16.73629 -15.77699 -15.09777 -14.90161 -14.73208 -14.25505 -13.98727 -13.38329 -12.84004 -12.56278 -12.31475 -11.71022 -11.57185 -11.41354 -11.11096 -11.03619 -10.88841 -10.59316 -10.35796 -10.25842 -9.97476 -9.54226 -9.47352 -8.41275 -7.98705 -6.43476 -3.84368 3.15237 3.25915 3.33287 3.89303 4.12926 4.16134 4.57361 4.66375 4.82994 4.93609 5.16317 5.22473 5.56258 5.63050 5.67065 5.72580 5.76273 5.89240 5.92582 6.00374 6.20124 6.32793 6.47193 6.52966 6.62005 7.53877 7.74260 8.04611 8.58971 9.16049 9.53143 10.04306 10.74282 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.073547 B = 0.005758 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.618503 B = 4861.232518 C = 5014.872547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.597 6.597 12 C -0.134 4.134 13 C -0.113 4.113 14 C 0.107 3.893 15 O -0.547 6.547 16 C -0.166 4.166 17 C -0.136 4.136 18 C -0.127 4.127 19 H 0.271 0.729 20 H 0.393 0.607 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.379 0.621 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.376 -12.483 1.527 12.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.226 3.774 11 O -0.483 6.483 12 C -0.175 4.175 13 C -0.151 4.151 14 C 0.066 3.934 15 O -0.354 6.354 16 C -0.204 4.204 17 C -0.173 4.173 18 C -0.165 4.165 19 H 0.081 0.919 20 H 0.226 0.774 21 H 0.093 0.907 22 H 0.096 0.904 23 H 0.097 0.903 24 H 0.093 0.907 25 H 0.228 0.772 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.400 -12.876 1.431 12.961 hybrid contribution -0.596 1.497 0.107 1.615 sum -0.995 -11.379 1.538 11.525 Atomic orbital electron populations 1.69621 1.05961 1.28092 1.50591 1.25272 0.95634 0.99764 0.97259 0.85802 0.79715 0.81104 0.77736 1.19217 1.20706 1.20724 1.19782 0.93428 0.82358 1.47529 0.87896 1.41930 1.09224 1.04741 1.63952 1.19903 0.88273 0.84984 0.84210 1.90514 1.14063 1.87441 1.56271 1.21467 0.99102 0.94487 1.02398 1.21773 0.97817 0.91346 1.04189 1.22289 0.89802 0.94796 0.86557 1.86412 1.49322 1.47273 1.52408 1.23628 1.01596 0.96924 0.98255 1.22755 0.98911 0.96396 0.99273 1.23015 0.97420 0.95790 1.00245 0.91892 0.77405 0.90699 0.90432 0.90303 0.90694 0.77218 0.89313 0.91159 0.90129 0.91680 0.90873 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 10 C 0.44 10.41 7.78 -10.99 -0.09 10.32 16 11 O -0.60 -16.31 15.56 5.54 0.09 -16.23 16 12 C -0.13 -2.28 5.26 -27.89 -0.15 -2.43 16 13 C -0.11 -1.80 4.14 -26.73 -0.11 -1.91 16 14 C 0.11 1.41 1.38 -89.81 -0.12 1.29 16 15 O -0.55 -7.42 13.39 -35.23 -0.47 -7.89 16 16 C -0.17 -1.94 7.32 -25.92 -0.19 -2.13 16 17 C -0.14 -1.46 8.02 -25.92 -0.21 -1.67 16 18 C -0.13 -1.52 7.47 -25.92 -0.19 -1.71 16 19 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 20 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 21 H 0.07 1.12 6.75 -51.92 -0.35 0.77 16 22 H 0.08 1.18 8.05 -51.93 -0.42 0.77 16 23 H 0.08 1.30 8.01 -51.93 -0.42 0.89 16 24 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 25 H 0.38 4.17 7.18 45.56 0.33 4.50 16 26 H 0.09 1.02 8.03 -51.93 -0.42 0.60 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 264.88 15.07 3.99 3.99 Total: -1.00 -31.45 264.88 -5.69 -37.14 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -3.64 Total: 11.55 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -1.30 Total: -6.35 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.67 Total: -38.26 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.39 Total: -24.12 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.45 -5.69 -37.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601026767.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.195 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds