Wall clock time and date at job start Sun Mar 29 2020 21:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 120.00034 * 2 1 4 4 H 1.48506 * 109.46906 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47271 * 299.99998 * 3 2 1 6 6 H 1.48505 * 109.46946 * 60.00502 * 3 2 1 7 7 C 1.38951 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00088 * 179.97438 * 7 2 1 9 9 N 1.37105 * 119.99793 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00052 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99721 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00235 * 180.02562 * 10 9 7 13 13 C 1.52999 * 109.47144 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46811 * 179.97438 * 13 12 10 15 15 O 1.42901 * 112.84973 * 53.80409 * 14 13 12 16 16 C 1.53772 * 113.61475 * 282.49623 * 14 13 12 17 17 C 1.53781 * 87.08354 * 220.02318 * 16 14 13 18 18 C 1.53781 * 113.61135 * 184.99718 * 14 13 12 19 19 H 0.97006 * 119.99740 * 359.97438 * 1 2 3 20 20 H 0.96997 * 119.99818 * 0.02562 * 9 7 2 21 21 H 1.09009 * 109.47208 * 59.99839 * 12 10 9 22 22 H 1.09001 * 109.47093 * 300.00146 * 12 10 9 23 23 H 1.08992 * 109.47188 * 60.00163 * 13 12 10 24 24 H 1.08997 * 109.46828 * 299.99882 * 13 12 10 25 25 H 0.96698 * 114.00171 * 309.66692 * 15 14 13 26 26 H 1.09000 * 113.61922 * 334.57064 * 16 14 13 27 27 H 1.08999 * 113.61689 * 105.47008 * 16 14 13 28 28 H 1.09005 * 113.61134 * 270.88438 * 17 16 14 29 29 H 1.08994 * 113.62071 * 139.98148 * 17 16 14 30 30 H 1.09000 * 113.61578 * 254.52872 * 18 14 13 31 31 H 1.09003 * 113.61302 * 25.43614 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 6 2.2379 -6.0259 -0.0016 14 6 1.4728 -7.3509 -0.0016 15 8 0.5215 -7.4424 -1.0640 16 6 0.9012 -7.7321 1.3741 17 6 1.3147 -9.1791 1.0575 18 6 2.3804 -8.5862 0.1206 19 1 -0.4850 0.8401 0.0004 20 1 0.3533 -2.3906 -0.0005 21 1 0.6173 -4.9205 -0.8914 22 1 0.6166 -4.9209 0.8886 23 1 2.8645 -5.9686 0.8883 24 1 2.8645 -5.9677 -0.8916 25 1 -0.0676 -6.6786 -1.1313 26 1 1.4472 -7.2951 2.2102 27 1 -0.1770 -7.5933 1.4527 28 1 0.5448 -9.7493 0.5376 29 1 1.7321 -9.7110 1.9124 30 1 2.4963 -9.1370 -0.8128 31 1 3.3309 -8.3826 0.6140 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601026767.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:14 Heat of formation + Delta-G solvation = -106.604920 kcal Electronic energy + Delta-G solvation = -14110.125046 eV Core-core repulsion = 11583.637628 eV Total energy + Delta-G solvation = -2526.487418 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.87072 -39.83896 -36.06458 -35.56886 -33.54339 -33.03522 -28.01589 -26.68292 -25.96743 -22.98996 -20.91245 -20.54553 -19.86675 -18.18657 -17.06265 -16.67991 -16.40695 -15.96688 -15.78828 -15.69762 -14.61722 -14.32993 -14.24065 -13.53071 -13.34959 -13.01823 -12.78832 -12.70851 -12.42985 -12.13313 -12.00107 -11.96558 -11.69043 -11.54486 -11.02403 -10.53970 -10.36142 -10.04157 -8.49298 -5.98461 1.35359 1.40953 1.55158 2.02588 2.28824 3.14298 3.17839 3.19507 3.61771 3.75889 3.94330 3.98456 4.25521 4.28623 4.42689 4.63307 4.83244 4.84263 4.87699 4.99519 5.07982 5.12033 5.28623 5.39242 5.41309 5.50882 5.97901 6.56389 6.81753 7.09660 7.53495 8.08850 8.68233 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.073547 B = 0.005758 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.618503 B = 4861.232518 C = 5014.872547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.434 3.566 11 O -0.639 6.639 12 C -0.121 4.121 13 C -0.106 4.106 14 C 0.105 3.895 15 O -0.556 6.556 16 C -0.163 4.163 17 C -0.127 4.127 18 C -0.132 4.132 19 H 0.278 0.722 20 H 0.398 0.602 21 H 0.101 0.899 22 H 0.103 0.897 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.389 0.611 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 -12.924 1.913 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.095 0.905 9 N -0.208 5.208 10 C 0.223 3.777 11 O -0.527 6.527 12 C -0.161 4.161 13 C -0.145 4.145 14 C 0.064 3.936 15 O -0.365 6.365 16 C -0.201 4.201 17 C -0.164 4.164 18 C -0.170 4.170 19 H 0.088 0.912 20 H 0.232 0.768 21 H 0.119 0.881 22 H 0.121 0.879 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.239 0.761 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.335 -13.326 1.815 13.515 hybrid contribution -0.312 1.611 -0.031 1.642 sum -1.647 -11.714 1.784 11.963 Atomic orbital electron populations 1.69673 1.06831 1.29336 1.50149 1.26047 0.96551 1.02434 0.96102 0.84872 0.77985 0.77043 0.78434 1.19885 1.19498 1.19444 1.19730 0.92711 0.84229 1.50122 0.90468 1.42006 1.09398 1.04813 1.64599 1.21061 0.88167 0.86532 0.81950 1.90484 1.16301 1.88344 1.57598 1.21443 0.99089 0.90709 1.04857 1.21711 0.97521 0.92640 1.02587 1.22308 0.90138 0.93476 0.87678 1.86407 1.49448 1.47968 1.52639 1.23625 1.02068 0.97421 0.96971 1.22715 0.98294 0.95977 0.99421 1.23102 0.97970 0.95210 1.00677 0.91202 0.76816 0.88059 0.87851 0.91309 0.93034 0.76052 0.89077 0.90332 0.89971 0.89969 0.91140 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.48 13.05 21.66 0.28 -49.19 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 3 Si 0.99 42.91 29.55 68.60 2.03 44.94 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.34 -19.38 9.68 84.04 0.81 -18.56 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 N -0.57 -29.45 5.29 -306.98 -1.62 -31.08 16 10 C 0.43 20.71 7.78 87.66 0.68 21.39 16 11 O -0.64 -35.85 15.56 -3.08 -0.05 -35.90 16 12 C -0.12 -3.96 5.26 29.85 0.16 -3.80 16 13 C -0.11 -3.30 4.14 30.60 0.13 -3.18 16 14 C 0.10 2.59 1.38 -10.27 -0.01 2.58 16 15 O -0.56 -13.90 13.39 -148.98 -1.99 -15.90 16 16 C -0.16 -3.39 7.32 31.12 0.23 -3.16 16 17 C -0.13 -2.39 8.02 31.12 0.25 -2.14 16 18 C -0.13 -2.92 7.47 31.12 0.23 -2.69 16 19 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 20 H 0.40 19.26 7.90 -92.71 -0.73 18.53 16 21 H 0.10 2.81 6.75 -2.38 -0.02 2.79 16 22 H 0.10 2.90 8.05 -2.39 -0.02 2.89 16 23 H 0.07 2.26 8.01 -2.39 -0.02 2.24 16 24 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 25 H 0.39 7.59 7.18 -74.06 -0.53 7.06 16 26 H 0.09 1.86 8.03 -2.39 -0.02 1.84 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.54 8.14 -2.38 -0.02 1.53 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.10 2.04 8.10 -2.39 -0.02 2.02 16 Total: -1.00 -67.48 264.88 1.46 -66.02 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: -0.12 Total: 30.81 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 2.94 Total: -9.70 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -1.34 Total: -80.27 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -2.04 Total: -51.79 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -67.48 1.46 -66.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601026767.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.587 kcal (2) G-P(sol) polarization free energy of solvation -67.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds