Wall clock time and date at job start Sun Mar 29 2020 22:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99941 * 2 1 4 4 H 1.48502 * 109.47293 * 239.99997 * 3 2 1 5 5 H 1.48497 * 109.47533 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46772 * 120.00745 * 3 2 1 7 7 C 1.37875 * 119.99481 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99918 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00641 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46992 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99525 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99675 * 179.72583 * 12 11 10 15 15 H 1.08995 * 112.85408 * 49.08168 * 14 12 11 16 16 C 1.53781 * 113.61390 * 180.28014 * 14 12 11 17 17 C 1.53785 * 87.08178 * 139.97949 * 16 14 12 18 18 H 1.09000 * 113.61352 * 89.11531 * 17 16 14 19 19 O 1.42898 * 113.61312 * 219.93285 * 17 16 14 20 20 C 1.53773 * 87.08215 * 334.56501 * 17 16 14 21 21 H 0.97000 * 120.00289 * 359.97438 * 1 2 3 22 22 H 1.09009 * 109.46564 * 60.00150 * 9 7 2 23 23 H 1.08993 * 109.47180 * 300.00758 * 9 7 2 24 24 H 1.08995 * 109.46838 * 60.00067 * 10 9 7 25 25 H 1.09001 * 109.46617 * 300.00402 * 10 9 7 26 26 H 0.97000 * 120.00580 * 0.02562 * 11 10 9 27 27 H 1.09001 * 113.61455 * 254.52767 * 16 14 12 28 28 H 1.08996 * 113.61809 * 25.42805 * 16 14 12 29 29 H 0.96698 * 113.99844 * 180.02562 * 19 17 16 30 30 H 1.09000 * 113.61979 * 270.88566 * 20 17 16 31 31 H 1.09004 * 113.61419 * 139.98062 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 7 1.5125 -4.9308 -0.0012 12 6 2.1864 -6.0980 -0.0018 13 8 3.3993 -6.0981 -0.0014 14 6 1.4329 -7.4031 0.0038 15 1 0.6483 -7.4422 -0.7518 16 6 2.3451 -8.6411 0.0092 17 6 1.3517 -9.2715 0.9996 18 1 0.5441 -9.8220 0.5170 19 8 1.9803 -10.0131 2.0469 20 6 0.9656 -7.8387 1.4028 21 1 -0.4850 0.8400 0.0004 22 1 0.6239 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8895 24 1 2.8717 -3.6044 0.8894 25 1 2.8718 -3.6044 -0.8905 26 1 0.5425 -4.9309 -0.0019 27 1 2.3897 -9.1548 -0.9511 28 1 3.3302 -8.4558 0.4373 29 1 1.3607 -10.4123 2.6728 30 1 1.5736 -7.4339 2.2119 31 1 -0.1035 -7.7045 1.5675 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602131780.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:32 Heat of formation + Delta-G solvation = -110.302257 kcal Electronic energy + Delta-G solvation = -13760.343650 eV Core-core repulsion = 11233.695903 eV Total energy + Delta-G solvation = -2526.647747 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.33821 -39.15729 -36.61915 -35.73716 -34.81707 -31.65268 -27.73902 -26.69066 -25.88461 -22.96028 -21.88193 -20.40802 -19.03980 -18.51211 -17.55486 -16.85535 -16.55160 -16.46046 -16.00302 -15.20349 -15.00538 -14.33344 -14.21050 -13.59239 -13.36921 -13.23124 -12.93577 -12.63230 -12.45015 -12.26113 -12.04007 -11.68397 -11.54764 -11.44332 -10.93004 -10.61244 -10.58397 -10.03575 -8.25317 -6.36060 1.41150 1.43328 1.51461 1.61848 2.25243 2.45003 3.09332 3.37774 3.43320 3.62002 3.82686 3.98321 4.16733 4.45052 4.50924 4.54936 4.75320 4.80392 4.82656 4.98098 5.08032 5.27886 5.36194 5.49102 5.56114 5.77107 6.14923 6.63811 6.76606 6.97904 7.28899 7.33345 8.86314 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.078086 B = 0.004910 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.491373 B = 5700.950337 C = 5849.133970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.551 4.551 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.138 3.862 11 N -0.715 5.715 12 C 0.511 3.489 13 O -0.596 6.596 14 C -0.131 4.131 15 H 0.152 0.848 16 C -0.120 4.120 17 C 0.091 3.909 18 H 0.125 0.875 19 O -0.582 6.582 20 C -0.149 4.149 21 H 0.267 0.733 22 H 0.010 0.990 23 H 0.009 0.991 24 H 0.041 0.959 25 H 0.044 0.956 26 H 0.412 0.588 27 H 0.094 0.906 28 H 0.065 0.935 29 H 0.397 0.603 30 H 0.066 0.934 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.337 -17.168 1.284 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.589 4.589 8 H 0.075 0.925 9 C -0.013 4.013 10 C 0.014 3.986 11 N -0.365 5.365 12 C 0.299 3.701 13 O -0.477 6.477 14 C -0.152 4.152 15 H 0.169 0.831 16 C -0.158 4.158 17 C 0.032 3.968 18 H 0.142 0.858 19 O -0.391 6.391 20 C -0.187 4.187 21 H 0.075 0.925 22 H 0.029 0.971 23 H 0.028 0.972 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.248 0.752 27 H 0.113 0.887 28 H 0.084 0.916 29 H 0.248 0.752 30 H 0.085 0.915 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.105 -16.847 0.979 17.006 hybrid contribution -0.378 1.123 0.286 1.219 sum -2.483 -15.724 1.265 15.969 Atomic orbital electron populations 1.70043 1.07501 1.28123 1.50829 1.25850 0.95800 1.03025 0.94290 0.85507 0.78338 0.78162 0.79097 1.19368 1.20390 1.19438 1.21444 0.93530 0.92065 1.51867 0.92518 1.19123 0.94160 0.91636 0.96431 1.21215 0.95146 0.82698 0.99504 1.46161 1.11134 1.05493 1.73711 1.21218 0.87771 0.86452 0.74652 1.90645 1.16401 1.88415 1.52258 1.22646 1.00496 0.89835 1.02191 0.83070 1.22985 0.98316 0.94020 1.00437 1.23363 0.95411 0.89630 0.88367 0.85768 1.86517 1.39261 1.71285 1.42002 1.23599 1.03292 0.97655 0.94150 0.92464 0.97123 0.97249 0.94021 0.93767 0.75178 0.88741 0.91618 0.75228 0.91524 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.22 13.29 21.45 0.28 -53.94 16 2 C 0.01 0.52 5.46 84.65 0.46 0.99 16 3 Si 0.96 43.76 29.54 68.60 2.03 45.78 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -31.12 9.11 25.60 0.23 -30.89 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 9 C 0.02 1.22 5.09 29.85 0.15 1.37 16 10 C 0.14 6.12 5.61 86.38 0.48 6.60 16 11 N -0.71 -25.04 5.56 -463.07 -2.57 -27.61 16 12 C 0.51 17.46 7.35 87.66 0.64 18.11 16 13 O -0.60 -26.05 15.90 -3.04 -0.05 -26.10 16 14 C -0.13 -2.89 4.15 -11.01 -0.05 -2.94 16 15 H 0.15 2.25 8.14 -2.39 -0.02 2.23 16 16 C -0.12 -2.71 7.24 31.12 0.23 -2.48 16 17 C 0.09 1.48 5.21 31.12 0.16 1.64 16 18 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 19 O -0.58 -10.85 13.67 -148.98 -2.04 -12.89 16 20 C -0.15 -2.77 7.46 31.12 0.23 -2.54 16 21 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 22 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 23 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.04 2.04 8.14 -2.39 -0.02 2.03 16 26 H 0.41 11.99 8.47 -92.71 -0.79 11.20 16 27 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 2.01 7.43 -2.39 -0.02 1.99 16 29 H 0.40 3.32 9.12 -74.06 -0.68 2.64 16 30 H 0.07 1.63 8.09 -2.39 -0.02 1.61 16 31 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -72.74 270.26 -0.12 -72.86 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -0.33 Total: 12.03 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 2.55 Total: -10.14 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -2.29 Total: -81.54 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -2.09 Total: -38.99 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -72.74 -0.12 -72.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602131780.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.438 kcal (2) G-P(sol) polarization free energy of solvation -72.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds