Wall clock time and date at job start Sun Mar 29 2020 21:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36932 * 119.99840 * 2 1 4 4 H 1.08008 * 119.99682 * 202.35071 * 3 2 1 5 5 C 1.38808 * 120.00389 * 22.34382 * 3 2 1 6 6 N 1.31624 * 119.99870 * 11.35068 * 5 3 2 7 7 Si 1.86797 * 120.00379 * 191.34455 * 5 3 2 8 8 H 1.48503 * 109.46931 * 90.00058 * 7 5 3 9 9 H 1.48496 * 109.47335 * 210.00303 * 7 5 3 10 10 H 1.48504 * 109.47222 * 330.00382 * 7 5 3 11 11 C 1.46498 * 119.99658 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.46759 * 269.99562 * 11 2 1 13 13 N 1.46905 * 109.47281 * 180.02562 * 12 11 2 14 14 C 1.46850 * 110.99631 * 45.78681 * 13 12 11 15 15 C 1.53040 * 109.52052 * 185.84099 * 14 13 12 16 16 C 1.53116 * 109.28161 * 300.82033 * 15 14 13 17 17 C 1.53126 * 109.15845 * 57.65663 * 16 15 14 18 18 C 1.46840 * 111.00530 * 169.99663 * 13 12 11 19 19 H 1.09004 * 109.47200 * 274.21135 * 1 2 3 20 20 H 1.08994 * 109.47046 * 34.21023 * 1 2 3 21 21 H 1.08996 * 109.47312 * 154.21563 * 1 2 3 22 22 H 0.97002 * 120.00138 * 180.02562 * 6 5 3 23 23 H 1.08999 * 109.47122 * 150.00064 * 11 2 1 24 24 H 1.09001 * 109.47582 * 29.99513 * 11 2 1 25 25 H 1.09000 * 109.47414 * 60.00353 * 12 11 2 26 26 H 1.09005 * 109.47498 * 300.00192 * 12 11 2 27 27 H 1.09005 * 109.46501 * 65.82777 * 14 13 12 28 28 H 1.08996 * 109.46385 * 305.86008 * 14 13 12 29 29 H 1.09004 * 109.49958 * 180.88062 * 15 14 13 30 30 H 1.08998 * 109.50347 * 60.76778 * 15 14 13 31 31 H 1.08993 * 109.52613 * 177.55639 * 16 15 14 32 32 H 1.08998 * 109.52259 * 297.75499 * 16 15 14 33 33 H 1.09002 * 109.50241 * 62.28477 * 17 16 15 34 34 H 1.08993 * 109.50264 * 182.40522 * 17 16 15 35 35 H 1.09004 * 109.45912 * 54.14187 * 18 13 12 36 36 H 1.09002 * 109.46285 * 294.18047 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3557 5 6 1.5338 2.3429 0.4570 6 7 0.3842 2.2691 1.0936 7 14 2.3367 4.0047 0.1687 8 1 1.8679 4.5631 -1.1250 9 1 1.9682 4.9302 1.2699 10 1 3.8123 3.8419 0.1318 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 7 3.1875 -2.9829 1.4413 14 6 4.3017 -2.9465 0.4854 15 6 4.9522 -4.3294 0.4053 16 6 5.4589 -4.7310 1.7933 17 6 4.2880 -4.7142 2.7800 18 6 3.6568 -3.3201 2.7912 19 1 -0.3634 0.0755 1.0249 20 1 -0.3633 0.8498 -0.5778 21 1 -0.3634 -0.9253 -0.4470 22 1 -0.0464 3.0776 1.4126 23 1 3.1499 -1.1382 -0.5143 24 1 1.6084 -2.0282 -0.5147 25 1 1.5001 -1.8415 1.9556 26 1 3.0416 -0.9515 1.9559 27 1 5.0403 -2.2163 0.8162 28 1 3.9271 -2.6638 -0.4983 29 1 5.7889 -4.2981 -0.2925 30 1 4.2178 -5.0577 0.0613 31 1 5.8842 -5.7336 1.7499 32 1 6.2216 -4.0246 2.1210 33 1 3.5431 -5.4485 2.4733 34 1 4.6503 -4.9577 3.7787 35 1 2.8139 -3.3086 3.4822 36 1 4.3984 -2.5881 3.1112 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610132655.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:13 Heat of formation + Delta-G solvation = 17.353233 kcal Electronic energy + Delta-G solvation = -14689.144346 eV Core-core repulsion = 12401.583913 eV Total energy + Delta-G solvation = -2287.560433 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.75084 -35.67348 -33.32772 -31.10793 -30.60870 -27.62985 -25.81084 -24.34666 -22.83155 -21.91044 -19.97634 -19.36782 -16.70873 -15.78357 -14.89052 -14.52203 -14.34672 -14.16079 -13.53714 -13.33817 -13.21957 -12.55447 -12.23198 -12.07663 -11.76429 -11.13167 -11.04627 -10.82552 -10.77033 -10.66759 -10.46685 -10.20860 -10.09459 -9.97589 -9.84395 -9.69688 -8.51298 -7.83703 -6.72191 -5.69103 -3.15047 3.39427 3.45362 3.46790 4.29426 4.55300 4.95342 5.00828 5.05377 5.38980 5.46797 5.59805 5.66399 5.76801 5.78690 5.87170 5.94508 6.02541 6.04990 6.09162 6.23166 6.29888 6.35056 6.47546 6.50815 6.80917 6.84388 6.98574 7.43882 7.55547 7.59442 7.78178 7.84553 8.44370 9.27920 9.91520 10.40679 11.35919 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045618 B = 0.006943 C = 0.006684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.645590 B = 4032.020544 C = 4188.131414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.603 5.603 3 C -0.253 4.253 4 H 0.067 0.933 5 C 0.000 4.000 6 N -0.909 5.909 7 Si 0.905 3.095 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.152 3.848 12 C 0.036 3.964 13 N -0.539 5.539 14 C 0.049 3.951 15 C -0.116 4.116 16 C -0.120 4.120 17 C -0.115 4.115 18 C 0.055 3.945 19 H 0.027 0.973 20 H 0.044 0.956 21 H -0.003 1.003 22 H 0.252 0.748 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.066 0.934 26 H 0.033 0.967 27 H 0.028 0.972 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.058 -11.940 0.975 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.326 5.326 3 C -0.383 4.383 4 H 0.085 0.915 5 C -0.198 4.198 6 N -0.555 5.555 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.206 1.206 11 C 0.024 3.976 12 C -0.094 4.094 13 N -0.265 5.265 14 C -0.079 4.079 15 C -0.154 4.154 16 C -0.158 4.158 17 C -0.153 4.153 18 C -0.074 4.074 19 H 0.045 0.955 20 H 0.063 0.937 21 H 0.016 0.984 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.085 0.915 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 6.608 -12.146 0.880 13.855 hybrid contribution 0.921 1.684 0.399 1.960 sum 7.529 -10.462 1.278 12.953 Atomic orbital electron populations 1.20797 0.82444 0.95587 0.99217 1.43992 1.02034 1.00665 1.85870 1.19223 0.97924 0.85500 1.35611 0.91519 1.25034 0.97757 0.98503 0.98495 1.70075 1.17887 1.26975 1.40513 0.86249 0.78759 0.84147 0.77358 1.21455 1.21746 1.20588 1.20963 0.95805 0.88049 0.92740 1.22954 0.97301 0.87251 1.01853 1.62082 1.24355 1.33844 1.06169 1.22170 0.92202 0.95798 0.97715 1.21602 0.99689 0.97599 0.96535 1.21571 0.97660 1.00746 0.95833 1.21575 0.97630 0.97476 0.98602 1.22049 0.98423 0.95713 0.91186 0.95475 0.93729 0.98402 0.93791 0.93760 0.93806 0.91527 0.94848 0.95341 0.89893 0.92059 0.91330 0.92341 0.92553 0.91321 0.92165 0.91185 0.95405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.20 9.01 59.85 0.54 4.74 16 2 N -0.60 -15.71 2.93 -181.12 -0.53 -16.24 16 3 C -0.25 -7.13 9.67 -15.06 -0.15 -7.27 16 4 H 0.07 1.84 7.84 -52.48 -0.41 1.43 16 5 C 0.00 0.00 5.13 -17.43 -0.09 -0.09 16 6 N -0.91 -27.02 10.59 55.49 0.59 -26.43 16 7 Si 0.90 22.24 29.57 -169.99 -5.03 17.21 16 8 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 C 0.15 3.28 4.96 -4.04 -0.02 3.26 16 12 C 0.04 0.73 5.60 -3.82 -0.02 0.71 16 13 N -0.54 -9.04 4.81 -234.66 -1.13 -10.17 16 14 C 0.05 0.75 4.85 -3.83 -0.02 0.73 16 15 C -0.12 -1.42 6.09 -26.65 -0.16 -1.59 16 16 C -0.12 -1.36 6.00 -26.61 -0.16 -1.52 16 17 C -0.11 -1.37 6.09 -26.65 -0.16 -1.53 16 18 C 0.05 0.81 5.42 -3.84 -0.02 0.79 16 19 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 20 H 0.04 1.21 7.19 -51.93 -0.37 0.84 16 21 H 0.00 -0.06 7.84 -51.93 -0.41 -0.46 16 22 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 23 H 0.04 0.93 6.10 -51.93 -0.32 0.61 16 24 H 0.04 0.90 7.86 -51.93 -0.41 0.49 16 25 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 1.30 5.81 -51.93 -0.30 0.99 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 279.89 15.07 4.22 4.22 Total: -1.00 -29.66 279.89 -8.52 -38.18 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -6.39 Total: -5.00 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -0.26 Total: -1.77 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -1.07 Total: -52.84 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.66 -8.52 -38.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610132655.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.537 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds