Wall clock time and date at job start Sun Mar 29 2020 21:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36932 * 119.99840 * 2 1 4 4 H 1.08008 * 119.99682 * 202.35071 * 3 2 1 5 5 C 1.38808 * 120.00389 * 22.34382 * 3 2 1 6 6 N 1.31624 * 119.99870 * 11.35068 * 5 3 2 7 7 Si 1.86797 * 120.00379 * 191.34455 * 5 3 2 8 8 H 1.48503 * 109.46931 * 90.00058 * 7 5 3 9 9 H 1.48496 * 109.47335 * 210.00303 * 7 5 3 10 10 H 1.48504 * 109.47222 * 330.00382 * 7 5 3 11 11 C 1.46498 * 119.99658 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.46759 * 269.99562 * 11 2 1 13 13 N 1.46905 * 109.47281 * 180.02562 * 12 11 2 14 14 C 1.46850 * 110.99631 * 45.78681 * 13 12 11 15 15 C 1.53040 * 109.52052 * 185.84099 * 14 13 12 16 16 C 1.53116 * 109.28161 * 300.82033 * 15 14 13 17 17 C 1.53126 * 109.15845 * 57.65663 * 16 15 14 18 18 C 1.46840 * 111.00530 * 169.99663 * 13 12 11 19 19 H 1.09004 * 109.47200 * 274.21135 * 1 2 3 20 20 H 1.08994 * 109.47046 * 34.21023 * 1 2 3 21 21 H 1.08996 * 109.47312 * 154.21563 * 1 2 3 22 22 H 0.97002 * 120.00138 * 180.02562 * 6 5 3 23 23 H 1.08999 * 109.47122 * 150.00064 * 11 2 1 24 24 H 1.09001 * 109.47582 * 29.99513 * 11 2 1 25 25 H 1.09000 * 109.47414 * 60.00353 * 12 11 2 26 26 H 1.09005 * 109.47498 * 300.00192 * 12 11 2 27 27 H 1.09005 * 109.46501 * 65.82777 * 14 13 12 28 28 H 1.08996 * 109.46385 * 305.86008 * 14 13 12 29 29 H 1.09004 * 109.49958 * 180.88062 * 15 14 13 30 30 H 1.08998 * 109.50347 * 60.76778 * 15 14 13 31 31 H 1.08993 * 109.52613 * 177.55639 * 16 15 14 32 32 H 1.08998 * 109.52259 * 297.75499 * 16 15 14 33 33 H 1.09002 * 109.50241 * 62.28477 * 17 16 15 34 34 H 1.08993 * 109.50264 * 182.40522 * 17 16 15 35 35 H 1.09004 * 109.45912 * 54.14187 * 18 13 12 36 36 H 1.09002 * 109.46285 * 294.18047 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3557 5 6 1.5338 2.3429 0.4570 6 7 0.3842 2.2691 1.0936 7 14 2.3367 4.0047 0.1687 8 1 1.8679 4.5631 -1.1250 9 1 1.9682 4.9302 1.2699 10 1 3.8123 3.8419 0.1318 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 7 3.1875 -2.9829 1.4413 14 6 4.3017 -2.9465 0.4854 15 6 4.9522 -4.3294 0.4053 16 6 5.4589 -4.7310 1.7933 17 6 4.2880 -4.7142 2.7800 18 6 3.6568 -3.3201 2.7912 19 1 -0.3634 0.0755 1.0249 20 1 -0.3633 0.8498 -0.5778 21 1 -0.3634 -0.9253 -0.4470 22 1 -0.0464 3.0776 1.4126 23 1 3.1499 -1.1382 -0.5143 24 1 1.6084 -2.0282 -0.5147 25 1 1.5001 -1.8415 1.9556 26 1 3.0416 -0.9515 1.9559 27 1 5.0403 -2.2163 0.8162 28 1 3.9271 -2.6638 -0.4983 29 1 5.7889 -4.2981 -0.2925 30 1 4.2178 -5.0577 0.0613 31 1 5.8842 -5.7336 1.7499 32 1 6.2216 -4.0246 2.1210 33 1 3.5431 -5.4485 2.4733 34 1 4.6503 -4.9577 3.7787 35 1 2.8139 -3.3086 3.4822 36 1 4.3984 -2.5881 3.1112 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610132655.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:13 Heat of formation + Delta-G solvation = -1.155574 kcal Electronic energy + Delta-G solvation = -14689.946948 eV Core-core repulsion = 12401.583913 eV Total energy + Delta-G solvation = -2288.363035 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.02324 -37.54468 -34.78952 -33.01071 -31.78106 -29.30272 -27.93517 -25.84041 -24.05465 -23.53263 -21.62159 -20.54330 -18.78498 -17.23362 -16.71188 -16.02389 -15.78403 -15.35428 -15.22326 -14.89529 -14.55552 -14.14129 -13.86674 -13.61993 -13.06911 -12.98389 -12.77241 -12.52467 -12.41959 -12.10216 -12.06639 -11.91993 -11.73425 -11.50273 -11.21826 -11.12534 -10.65707 -9.25501 -8.83366 -7.85452 -5.34518 1.44162 1.45619 1.54279 2.47811 2.95373 3.29259 3.78955 3.94600 3.97676 4.07492 4.26436 4.29697 4.44465 4.56422 4.60705 4.69485 4.72969 4.84104 4.87996 4.97407 5.07432 5.10385 5.11358 5.23469 5.25861 5.32123 5.32886 5.51826 5.58888 5.69782 6.11637 6.24407 6.33070 7.12560 7.84083 8.28032 9.18325 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045618 B = 0.006943 C = 0.006684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.645590 B = 4032.020544 C = 4188.131414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.620 5.620 3 C -0.265 4.265 4 H 0.069 0.931 5 C -0.054 4.054 6 N -0.940 5.940 7 Si 0.971 3.029 8 H -0.283 1.283 9 H -0.294 1.294 10 H -0.270 1.270 11 C 0.155 3.845 12 C 0.055 3.945 13 N -0.537 5.537 14 C 0.045 3.955 15 C -0.111 4.111 16 C -0.119 4.119 17 C -0.109 4.109 18 C 0.050 3.950 19 H 0.002 0.998 20 H 0.020 0.980 21 H 0.030 0.970 22 H 0.249 0.751 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.002 0.998 27 H 0.017 0.983 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.525 -13.287 0.571 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.343 5.343 3 C -0.395 4.395 4 H 0.087 0.913 5 C -0.249 4.249 6 N -0.586 5.586 7 Si 0.799 3.201 8 H -0.209 1.209 9 H -0.220 1.220 10 H -0.194 1.194 11 C 0.028 3.972 12 C -0.076 4.076 13 N -0.262 5.262 14 C -0.083 4.083 15 C -0.148 4.148 16 C -0.157 4.157 17 C -0.146 4.146 18 C -0.079 4.079 19 H 0.020 0.980 20 H 0.038 0.962 21 H 0.048 0.952 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.020 0.980 27 H 0.035 0.965 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 8.102 -13.531 0.468 15.778 hybrid contribution 0.482 2.027 0.520 2.147 sum 8.584 -11.504 0.987 14.388 Atomic orbital electron populations 1.20556 0.82568 0.96070 0.97519 1.44238 1.02351 1.01697 1.86046 1.19537 0.98126 0.86643 1.35170 0.91327 1.25830 0.98488 1.01977 0.98618 1.70246 1.19251 1.27522 1.41630 0.85212 0.78314 0.79604 0.76995 1.20949 1.22031 1.19443 1.21047 0.95844 0.86660 0.93602 1.22547 0.96641 0.88229 1.00167 1.62101 1.25292 1.31057 1.07773 1.22271 0.91440 0.97836 0.96707 1.21587 1.00143 0.95276 0.97836 1.21593 0.97236 1.02130 0.94743 1.21559 0.97819 0.95055 1.00193 1.22176 0.98279 0.97563 0.89833 0.97987 0.96157 0.95170 0.94221 0.93112 0.92249 0.93089 0.97964 0.96509 0.90491 0.90178 0.91014 0.89844 0.92725 0.91067 0.90125 0.91573 0.96333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.20 9.01 127.77 1.15 10.35 16 2 N -0.62 -32.53 2.93 -726.94 -2.13 -34.65 16 3 C -0.26 -15.01 9.67 84.03 0.81 -14.20 16 4 H 0.07 3.78 7.84 -2.91 -0.02 3.76 16 5 C -0.05 -3.12 5.13 84.86 0.44 -2.68 16 6 N -0.94 -56.98 10.59 21.65 0.23 -56.75 16 7 Si 0.97 45.97 29.57 68.60 2.03 48.00 16 8 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 9 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 C 0.15 6.61 4.96 86.38 0.43 7.04 16 12 C 0.05 2.23 5.60 86.30 0.48 2.71 16 13 N -0.54 -17.59 4.81 -896.33 -4.31 -21.89 16 14 C 0.05 1.32 4.85 86.33 0.42 1.73 16 15 C -0.11 -2.39 6.09 30.65 0.19 -2.20 16 16 C -0.12 -2.31 6.00 30.68 0.18 -2.12 16 17 C -0.11 -2.30 6.09 30.65 0.19 -2.11 16 18 C 0.05 1.42 5.42 86.33 0.47 1.89 16 19 H 0.00 0.10 7.42 -2.39 -0.02 0.08 16 20 H 0.02 1.11 7.19 -2.39 -0.02 1.09 16 21 H 0.03 1.33 7.84 -2.39 -0.02 1.31 16 22 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 23 H 0.05 2.10 6.10 -2.39 -0.01 2.09 16 24 H 0.06 2.35 7.86 -2.39 -0.02 2.33 16 25 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.00 0.09 8.08 -2.38 -0.02 0.08 16 27 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.08 2.30 5.81 -2.39 -0.01 2.29 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.91 8.12 -2.38 -0.02 1.89 16 36 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -63.45 279.89 1.59 -61.86 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: 1.01 Total: 3.02 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 4.76 Total: 0.41 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -6.20 Total: -113.30 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -63.45 1.59 -61.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610132655.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.706 kcal (2) G-P(sol) polarization free energy of solvation -63.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds