Wall clock time and date at job start Sun Mar 29 2020 21:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46904 * 109.47198 * 2 1 4 4 C 1.46896 * 110.99809 * 66.04762 * 3 2 1 5 5 C 1.46895 * 111.00033 * 190.00138 * 3 2 1 6 6 C 1.53010 * 109.47169 * 75.84273 * 5 3 2 7 7 H 1.08996 * 110.88374 * 301.31399 * 6 5 3 8 8 C 1.55159 * 111.00282 * 177.43108 * 6 5 3 9 9 C 1.54363 * 102.91739 * 206.45021 * 8 6 5 10 10 N 1.47021 * 107.29285 * 22.14356 * 9 8 6 11 11 C 1.36930 * 125.65359 * 181.05283 * 10 9 8 12 12 H 1.08000 * 120.00643 * 180.02562 * 11 10 9 13 13 C 1.38820 * 119.99735 * 0.04242 * 11 10 9 14 14 N 1.31619 * 120.00051 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99718 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46966 * 90.00254 * 15 13 11 17 17 H 1.48499 * 109.46736 * 210.00015 * 15 13 11 18 18 H 1.48497 * 109.47187 * 329.99661 * 15 13 11 19 19 C 1.47425 * 108.70093 * 1.08986 * 10 9 8 20 20 H 1.09006 * 109.46751 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47060 * 299.99567 * 1 2 3 22 22 H 1.08994 * 109.47780 * 60.00170 * 1 2 3 23 23 H 1.09009 * 109.47501 * 120.00166 * 2 1 3 24 24 H 1.09005 * 109.47340 * 239.99755 * 2 1 3 25 25 H 1.08996 * 109.47683 * 54.71641 * 4 3 2 26 26 H 1.08997 * 109.47071 * 174.72210 * 4 3 2 27 27 H 1.09000 * 109.46953 * 294.71683 * 4 3 2 28 28 H 1.09002 * 109.47147 * 195.84109 * 5 3 2 29 29 H 1.09000 * 109.47723 * 315.84010 * 5 3 2 30 30 H 1.08994 * 110.72288 * 324.78749 * 8 6 5 31 31 H 1.08996 * 110.71484 * 88.06123 * 8 6 5 32 32 H 1.08996 * 109.84961 * 262.73040 * 9 8 6 33 33 H 1.09005 * 110.03069 * 141.65322 * 9 8 6 34 34 H 0.96994 * 119.99597 * 179.97438 * 14 13 11 35 35 H 1.08994 * 110.36803 * 217.03611 * 19 10 9 36 36 H 1.09003 * 110.37049 * 94.71117 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 3.4684 1.4311 -0.2382 6 6 3.7500 1.1761 -1.7203 7 1 3.3553 0.2084 -2.0299 8 6 5.2680 1.2806 -2.0240 9 6 5.2950 1.6829 -3.5140 10 7 3.9951 2.2955 -3.8249 11 6 3.6085 2.7690 -5.0502 12 1 2.6280 3.2038 -5.1764 13 6 4.4770 2.6901 -6.1303 14 7 5.6720 2.1604 -5.9765 15 14 3.9493 3.3355 -7.8020 16 1 4.3265 4.7668 -7.9216 17 1 4.6246 2.5548 -8.8696 18 1 2.4776 3.1977 -7.9438 19 6 3.1770 2.3163 -2.5986 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 2.0403 1.4864 2.0983 26 1 2.1240 3.0578 1.2666 27 1 0.5868 2.1625 1.3250 28 1 3.8514 2.4128 0.0407 29 1 3.9600 0.6655 0.3620 30 1 5.7324 2.0509 -1.4084 31 1 5.7582 0.3186 -1.8747 32 1 5.4457 0.7988 -4.1334 33 1 6.0953 2.4011 -3.6925 34 1 6.2786 2.1050 -6.7314 35 1 2.1313 2.1224 -2.8369 36 1 3.2797 3.2750 -2.0902 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610394854.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:27 Heat of formation + Delta-G solvation = 23.347821 kcal Electronic energy + Delta-G solvation = -14687.356321 eV Core-core repulsion = 12400.055832 eV Total energy + Delta-G solvation = -2287.300488 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.34152 -36.47422 -32.71420 -30.84130 -29.54294 -28.23712 -25.99786 -24.69830 -23.14553 -21.00352 -19.86718 -19.21567 -16.72358 -15.59488 -15.23938 -15.00138 -14.48514 -13.99996 -13.61862 -13.08940 -12.73981 -12.18070 -12.05579 -11.91945 -11.69576 -11.63213 -11.27889 -11.00416 -10.83017 -10.76660 -10.58855 -10.05175 -9.92265 -9.76160 -9.62608 -9.50968 -8.48830 -8.12570 -6.68079 -5.59827 -2.91599 3.46954 3.51533 3.53768 4.06245 4.60266 5.06767 5.17043 5.26364 5.39791 5.51597 5.54789 5.61850 5.62963 5.72413 5.78358 5.81628 5.93819 6.02396 6.12341 6.16970 6.23084 6.29637 6.54102 6.66975 6.76115 6.99037 7.16860 7.24623 7.28653 7.68932 7.75581 7.94033 8.39437 9.35160 9.96407 10.64140 11.52405 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044417 B = 0.007181 C = 0.006632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.232721 B = 3898.241337 C = 4220.971039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.025 3.975 5 C 0.069 3.931 6 C -0.096 4.096 7 H 0.070 0.930 8 C -0.140 4.140 9 C 0.178 3.822 10 N -0.611 5.611 11 C -0.221 4.221 12 H 0.077 0.923 13 C -0.013 4.013 14 N -0.925 5.925 15 Si 0.910 3.090 16 H -0.290 1.290 17 H -0.292 1.292 18 H -0.282 1.282 19 C 0.156 3.844 20 H 0.054 0.946 21 H 0.050 0.950 22 H 0.065 0.935 23 H 0.027 0.973 24 H 0.077 0.923 25 H 0.019 0.981 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.250 0.750 35 H 0.040 0.960 36 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.841 -3.406 13.279 14.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 N -0.263 5.263 4 C -0.123 4.123 5 C -0.059 4.059 6 C -0.116 4.116 7 H 0.088 0.912 8 C -0.179 4.179 9 C 0.054 3.946 10 N -0.337 5.337 11 C -0.350 4.350 12 H 0.095 0.905 13 C -0.209 4.209 14 N -0.574 5.574 15 Si 0.741 3.259 16 H -0.217 1.217 17 H -0.218 1.218 18 H -0.208 1.208 19 C 0.030 3.970 20 H 0.073 0.927 21 H 0.070 0.930 22 H 0.084 0.916 23 H 0.045 0.955 24 H 0.096 0.904 25 H 0.037 0.963 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -5.993 -3.140 12.675 14.367 hybrid contribution 0.238 -0.102 -0.225 0.343 sum -5.755 -3.242 12.449 14.093 Atomic orbital electron populations 1.21781 0.95181 1.01175 1.02378 1.22126 0.95892 0.89147 1.00637 1.61961 1.14645 1.15711 1.33983 1.22401 1.01494 0.98709 0.89727 1.22129 0.86475 1.00609 0.96673 1.22305 0.96332 1.00089 0.92904 0.91181 1.22906 0.94760 0.99897 1.00341 1.21102 0.88280 0.97228 0.88028 1.44566 1.12886 1.71071 1.05192 1.19094 0.99077 1.31968 0.84813 0.90524 1.24793 0.96419 1.01605 0.98035 1.69974 1.07302 1.50366 1.29759 0.86133 0.77597 0.78216 0.83957 1.21729 1.21787 1.20750 1.21369 0.94552 0.94047 0.86999 0.92679 0.93046 0.91633 0.95519 0.90433 0.96260 0.91581 0.91515 0.91022 0.95239 0.92697 0.92579 0.93897 0.94199 0.93948 0.94210 0.96774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.83 37.15 0.37 -1.25 16 2 C 0.05 0.63 5.50 -3.82 -0.02 0.61 16 3 N -0.54 -7.56 4.48 -242.91 -1.09 -8.64 16 4 C 0.03 0.29 9.23 60.06 0.55 0.84 16 5 C 0.07 1.03 4.45 -3.82 -0.02 1.01 16 6 C -0.10 -1.78 3.06 -88.46 -0.27 -2.05 16 7 H 0.07 1.32 6.85 -51.93 -0.36 0.97 16 8 C -0.14 -2.73 6.42 -24.87 -0.16 -2.89 16 9 C 0.18 4.55 5.38 -3.04 -0.02 4.54 16 10 N -0.61 -16.52 3.39 -170.05 -0.58 -17.09 16 11 C -0.22 -6.46 10.28 -15.06 -0.15 -6.62 16 12 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 13 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 14 N -0.93 -28.24 10.31 55.49 0.57 -27.67 16 15 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 17 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 C 0.16 3.47 6.50 -2.53 -0.02 3.46 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.51 6.67 -51.93 -0.35 0.17 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.03 0.31 8.07 -51.92 -0.42 -0.11 16 24 H 0.08 1.06 6.67 -51.93 -0.35 0.71 16 25 H 0.02 0.20 8.07 -51.93 -0.42 -0.22 16 26 H 0.07 0.74 7.85 -51.93 -0.41 0.33 16 27 H 0.07 0.70 6.73 -51.93 -0.35 0.35 16 28 H 0.07 1.06 7.72 -51.93 -0.40 0.66 16 29 H 0.03 0.41 8.00 -51.93 -0.42 -0.01 16 30 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.04 1.20 7.38 -51.93 -0.38 0.82 16 33 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 34 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.01 0.32 8.02 -51.93 -0.42 -0.09 16 LS Contribution 281.48 15.07 4.24 4.24 Total: -1.00 -31.20 281.48 -8.01 -39.21 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -6.30 Total: -5.05 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 0.17 Total: -2.83 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -1.09 Total: -53.40 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.20 -8.01 -39.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610394854.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.558 kcal (2) G-P(sol) polarization free energy of solvation -31.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds