Wall clock time and date at job start Sun Mar 29 2020 21:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46904 * 109.47198 * 2 1 4 4 C 1.46896 * 110.99809 * 66.04762 * 3 2 1 5 5 C 1.46895 * 111.00033 * 190.00138 * 3 2 1 6 6 C 1.53010 * 109.47169 * 75.84273 * 5 3 2 7 7 H 1.08996 * 110.88374 * 301.31399 * 6 5 3 8 8 C 1.55159 * 111.00282 * 177.43108 * 6 5 3 9 9 C 1.54363 * 102.91739 * 206.45021 * 8 6 5 10 10 N 1.47021 * 107.29285 * 22.14356 * 9 8 6 11 11 C 1.36930 * 125.65359 * 181.05283 * 10 9 8 12 12 H 1.08000 * 120.00643 * 180.02562 * 11 10 9 13 13 C 1.38820 * 119.99735 * 0.04242 * 11 10 9 14 14 N 1.31619 * 120.00051 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99718 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46966 * 90.00254 * 15 13 11 17 17 H 1.48499 * 109.46736 * 210.00015 * 15 13 11 18 18 H 1.48497 * 109.47187 * 329.99661 * 15 13 11 19 19 C 1.47425 * 108.70093 * 1.08986 * 10 9 8 20 20 H 1.09006 * 109.46751 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47060 * 299.99567 * 1 2 3 22 22 H 1.08994 * 109.47780 * 60.00170 * 1 2 3 23 23 H 1.09009 * 109.47501 * 120.00166 * 2 1 3 24 24 H 1.09005 * 109.47340 * 239.99755 * 2 1 3 25 25 H 1.08996 * 109.47683 * 54.71641 * 4 3 2 26 26 H 1.08997 * 109.47071 * 174.72210 * 4 3 2 27 27 H 1.09000 * 109.46953 * 294.71683 * 4 3 2 28 28 H 1.09002 * 109.47147 * 195.84109 * 5 3 2 29 29 H 1.09000 * 109.47723 * 315.84010 * 5 3 2 30 30 H 1.08994 * 110.72288 * 324.78749 * 8 6 5 31 31 H 1.08996 * 110.71484 * 88.06123 * 8 6 5 32 32 H 1.08996 * 109.84961 * 262.73040 * 9 8 6 33 33 H 1.09005 * 110.03069 * 141.65322 * 9 8 6 34 34 H 0.96994 * 119.99597 * 179.97438 * 14 13 11 35 35 H 1.08994 * 110.36803 * 217.03611 * 19 10 9 36 36 H 1.09003 * 110.37049 * 94.71117 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 3.4684 1.4311 -0.2382 6 6 3.7500 1.1761 -1.7203 7 1 3.3553 0.2084 -2.0299 8 6 5.2680 1.2806 -2.0240 9 6 5.2950 1.6829 -3.5140 10 7 3.9951 2.2955 -3.8249 11 6 3.6085 2.7690 -5.0502 12 1 2.6280 3.2038 -5.1764 13 6 4.4770 2.6901 -6.1303 14 7 5.6720 2.1604 -5.9765 15 14 3.9493 3.3355 -7.8020 16 1 4.3265 4.7668 -7.9216 17 1 4.6246 2.5548 -8.8696 18 1 2.4776 3.1977 -7.9438 19 6 3.1770 2.3163 -2.5986 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 2.0403 1.4864 2.0983 26 1 2.1240 3.0578 1.2666 27 1 0.5868 2.1625 1.3250 28 1 3.8514 2.4128 0.0407 29 1 3.9600 0.6655 0.3620 30 1 5.7324 2.0509 -1.4084 31 1 5.7582 0.3186 -1.8747 32 1 5.4457 0.7988 -4.1334 33 1 6.0953 2.4011 -3.6925 34 1 6.2786 2.1050 -6.7314 35 1 2.1313 2.1224 -2.8369 36 1 3.2797 3.2750 -2.0902 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610394854.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:26 Heat of formation + Delta-G solvation = 2.968157 kcal Electronic energy + Delta-G solvation = -14688.240049 eV Core-core repulsion = 12400.055832 eV Total energy + Delta-G solvation = -2288.184217 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.75702 -37.95271 -34.66722 -32.21118 -31.14646 -29.84835 -27.51124 -26.34394 -24.54168 -22.27965 -21.72890 -20.67292 -18.82960 -17.00558 -16.62607 -16.35634 -16.10584 -15.51194 -15.18712 -14.32404 -14.15418 -13.85877 -13.70497 -13.26259 -13.14596 -12.80058 -12.76272 -12.60841 -12.48668 -12.11677 -12.00434 -11.86516 -11.78100 -11.51296 -11.38385 -11.21042 -10.69426 -9.14310 -8.86262 -7.83480 -5.18413 1.44878 1.47768 1.56548 2.51108 3.02784 3.34177 3.74225 3.95954 4.09325 4.14399 4.21019 4.34769 4.51936 4.59408 4.66553 4.71173 4.72293 4.81102 4.88845 4.96283 5.03339 5.08930 5.13137 5.16625 5.24296 5.40982 5.46045 5.53962 5.69887 5.78857 6.21028 6.22701 6.27869 7.12956 7.81521 8.46936 9.27447 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044417 B = 0.007181 C = 0.006632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.232721 B = 3898.241337 C = 4220.971039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 N -0.560 5.560 4 C 0.026 3.974 5 C 0.080 3.920 6 C -0.080 4.080 7 H 0.065 0.935 8 C -0.125 4.125 9 C 0.184 3.816 10 N -0.634 5.634 11 C -0.242 4.242 12 H 0.079 0.921 13 C -0.070 4.070 14 N -0.954 5.954 15 Si 0.980 3.020 16 H -0.285 1.285 17 H -0.292 1.292 18 H -0.269 1.269 19 C 0.156 3.844 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.047 0.953 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.033 0.967 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.007 0.993 33 H 0.004 0.996 34 H 0.246 0.754 35 H 0.031 0.969 36 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.777 -3.552 14.800 16.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 N -0.285 5.285 4 C -0.121 4.121 5 C -0.049 4.049 6 C -0.100 4.100 7 H 0.083 0.917 8 C -0.164 4.164 9 C 0.059 3.941 10 N -0.360 5.360 11 C -0.371 4.371 12 H 0.097 0.903 13 C -0.263 4.263 14 N -0.604 5.604 15 Si 0.808 3.192 16 H -0.212 1.212 17 H -0.219 1.219 18 H -0.194 1.194 19 C 0.031 3.969 20 H 0.088 0.912 21 H 0.082 0.918 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.051 0.949 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.025 0.975 33 H 0.022 0.978 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -6.957 -3.284 14.232 16.179 hybrid contribution 0.495 -0.048 -0.683 0.845 sum -6.462 -3.332 13.550 15.377 Atomic orbital electron populations 1.21744 0.94126 1.02091 1.02077 1.22153 0.96778 0.88474 1.00503 1.61906 1.13911 1.16785 1.35878 1.22425 1.02157 0.98634 0.88914 1.21945 0.87657 1.01475 0.93789 1.22174 0.94806 0.98132 0.94891 0.91704 1.22765 0.96132 1.01566 0.95901 1.20901 0.86898 0.94642 0.91678 1.44927 1.14140 1.70919 1.06025 1.19495 0.99342 1.32047 0.86251 0.90292 1.25692 0.96531 1.02183 1.01866 1.70207 1.08290 1.51433 1.30468 0.85050 0.77758 0.77432 0.78952 1.21165 1.21874 1.19370 1.21476 0.93712 0.95633 0.86032 0.91225 0.91845 0.93360 0.94063 0.92049 0.94883 0.91491 0.90637 0.90614 0.93229 0.90874 0.90185 0.97485 0.97800 0.94448 0.95016 0.96619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.83 71.98 0.71 -2.11 16 2 C 0.05 1.11 5.50 86.30 0.48 1.58 16 3 N -0.56 -14.31 4.48 -922.45 -4.14 -18.45 16 4 C 0.03 0.52 9.23 127.69 1.18 1.70 16 5 C 0.08 2.15 4.45 86.31 0.38 2.53 16 6 C -0.08 -2.84 3.06 -9.40 -0.03 -2.87 16 7 H 0.06 2.38 6.85 -2.39 -0.02 2.36 16 8 C -0.12 -4.71 6.42 31.80 0.20 -4.51 16 9 C 0.18 9.63 5.38 86.74 0.47 10.09 16 10 N -0.63 -34.94 3.39 -691.91 -2.35 -37.29 16 11 C -0.24 -14.44 10.28 84.04 0.86 -13.58 16 12 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 13 C -0.07 -4.20 5.49 84.86 0.47 -3.73 16 14 N -0.95 -60.01 10.31 21.65 0.22 -59.78 16 15 Si 0.98 47.61 29.55 68.60 2.03 49.64 16 16 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 17 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 19 C 0.16 6.92 6.50 86.86 0.56 7.48 16 20 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 21 H 0.06 1.09 6.67 -2.39 -0.02 1.07 16 22 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.04 0.83 8.07 -2.38 -0.02 0.81 16 24 H 0.06 1.58 6.67 -2.38 -0.02 1.57 16 25 H 0.03 0.57 8.07 -2.39 -0.02 0.55 16 26 H 0.07 1.31 7.85 -2.39 -0.02 1.29 16 27 H 0.07 1.36 6.73 -2.39 -0.02 1.34 16 28 H 0.08 2.01 7.72 -2.39 -0.02 1.99 16 29 H 0.05 1.18 8.00 -2.39 -0.02 1.16 16 30 H 0.07 2.51 8.04 -2.39 -0.02 2.49 16 31 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.01 0.40 7.38 -2.39 -0.02 0.39 16 33 H 0.00 0.22 7.50 -2.38 -0.02 0.20 16 34 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 35 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.02 0.70 8.02 -2.39 -0.02 0.68 16 Total: -1.00 -68.39 281.48 2.06 -66.32 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: 1.02 Total: 2.96 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 5.28 Total: -3.41 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -6.26 Total: -115.51 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -68.39 2.06 -66.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610394854.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.289 kcal (2) G-P(sol) polarization free energy of solvation -68.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds