Wall clock time and date at job start Sun Mar 29 2020 21:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.46619 * 2 1 4 4 C 1.46901 * 111.00443 * 66.04574 * 3 2 1 5 5 C 1.46906 * 110.99820 * 189.99887 * 3 2 1 6 6 C 1.52996 * 109.47022 * 169.99926 * 5 3 2 7 7 H 1.08998 * 110.89273 * 51.12010 * 6 5 3 8 8 C 1.55158 * 111.00324 * 174.99896 * 6 5 3 9 9 C 1.54323 * 102.94209 * 153.57359 * 8 6 5 10 10 N 1.47023 * 107.27372 * 337.80896 * 9 8 6 11 11 C 1.36934 * 125.64691 * 178.96091 * 10 9 8 12 12 H 1.08000 * 119.99869 * 179.97438 * 11 10 9 13 13 C 1.38810 * 120.00546 * 359.97346 * 11 10 9 14 14 N 1.31622 * 119.99686 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00311 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47062 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47288 * 120.00248 * 15 13 11 18 18 H 1.48500 * 109.47284 * 239.99995 * 15 13 11 19 19 C 1.47417 * 108.70121 * 358.93908 * 10 9 8 20 20 H 1.09007 * 109.46731 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47270 * 300.00135 * 1 2 3 22 22 H 1.08999 * 109.47017 * 60.00257 * 1 2 3 23 23 H 1.08994 * 109.47270 * 239.99865 * 2 1 3 24 24 H 1.08999 * 109.47017 * 119.99742 * 2 1 3 25 25 H 1.09002 * 109.47401 * 183.95136 * 4 3 2 26 26 H 1.09001 * 109.46874 * 63.95149 * 4 3 2 27 27 H 1.09004 * 109.46970 * 303.95282 * 4 3 2 28 28 H 1.08997 * 109.46995 * 289.99871 * 5 3 2 29 29 H 1.09001 * 109.46848 * 49.99877 * 5 3 2 30 30 H 1.09001 * 110.72508 * 271.94033 * 8 6 5 31 31 H 1.09006 * 110.72102 * 35.03592 * 8 6 5 32 32 H 1.09001 * 109.88430 * 97.22920 * 9 8 6 33 33 H 1.08998 * 109.88282 * 218.23427 * 9 8 6 34 34 H 0.96996 * 119.99993 * 179.97438 * 14 13 11 35 35 H 1.08999 * 110.37183 * 265.29175 * 19 10 9 36 36 H 1.09002 * 110.36542 * 142.96759 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0670 1.2533 5 6 3.4685 1.4312 -0.2381 6 6 3.8997 2.8792 -0.4791 7 1 3.5292 3.5319 0.3114 8 6 5.4421 2.9856 -0.6106 9 6 5.6285 4.2441 -1.4840 10 7 4.3750 4.4519 -2.2237 11 6 4.1233 5.4774 -3.0955 12 1 3.1662 5.5418 -3.5915 13 6 5.0984 6.4343 -3.3416 14 7 6.2647 6.3561 -2.7366 15 14 4.7548 7.8336 -4.5303 16 1 3.3792 7.6960 -5.0726 17 1 4.8777 9.1304 -3.8172 18 1 5.7340 7.7874 -5.6457 19 6 3.4341 3.3729 -1.8717 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 1.9822 3.1100 1.1987 26 1 2.1769 1.5792 2.0859 27 1 0.5918 2.0179 1.4052 28 1 3.9925 1.0361 0.6321 29 1 3.7122 0.8290 -1.1134 30 1 5.9040 3.1227 0.3671 31 1 5.8485 2.1045 -1.1074 32 1 5.8329 5.1077 -0.8511 33 1 6.4524 4.0927 -2.1814 34 1 6.9462 7.0244 -2.9089 35 1 3.4942 2.5644 -2.6003 36 1 2.4167 3.7600 -1.8163 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610394855.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:29 Heat of formation + Delta-G solvation = 24.167594 kcal Electronic energy + Delta-G solvation = -14632.929633 eV Core-core repulsion = 12345.664693 eV Total energy + Delta-G solvation = -2287.264940 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.36702 -36.50743 -32.79930 -30.93753 -29.31112 -28.02395 -26.47375 -24.83147 -22.94207 -20.90251 -19.87813 -19.26078 -16.74750 -15.85460 -15.34599 -14.84685 -14.42448 -14.01852 -13.53931 -13.27897 -12.70285 -12.14671 -12.07629 -11.87944 -11.73011 -11.65734 -11.28468 -11.01408 -10.85326 -10.76536 -10.66412 -10.04710 -9.91401 -9.75411 -9.63790 -9.52119 -8.50278 -8.13914 -6.69472 -5.60959 -2.92936 3.45955 3.51316 3.54013 4.05211 4.59278 4.99233 5.20356 5.21514 5.40704 5.47824 5.55733 5.58619 5.63112 5.69793 5.77271 5.81607 5.92555 6.05353 6.09465 6.15015 6.18020 6.27847 6.53515 6.65918 6.74242 6.94999 7.14267 7.22999 7.28127 7.68137 7.74327 7.93119 8.37945 9.33925 9.95043 10.62583 11.51286 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049747 B = 0.006812 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.713435 B = 4109.701902 C = 4443.070780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.021 3.979 5 C 0.070 3.930 6 C -0.099 4.099 7 H 0.073 0.927 8 C -0.140 4.140 9 C 0.179 3.821 10 N -0.610 5.610 11 C -0.221 4.221 12 H 0.077 0.923 13 C -0.013 4.013 14 N -0.925 5.925 15 Si 0.910 3.090 16 H -0.280 1.280 17 H -0.292 1.292 18 H -0.292 1.292 19 C 0.153 3.847 20 H 0.054 0.946 21 H 0.053 0.947 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.027 0.973 25 H 0.074 0.926 26 H 0.019 0.981 27 H 0.065 0.935 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.250 0.750 35 H 0.015 0.985 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.136 -11.260 7.268 15.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.263 5.263 4 C -0.127 4.127 5 C -0.058 4.058 6 C -0.119 4.119 7 H 0.091 0.909 8 C -0.179 4.179 9 C 0.054 3.946 10 N -0.336 5.336 11 C -0.349 4.349 12 H 0.095 0.905 13 C -0.208 4.208 14 N -0.574 5.574 15 Si 0.741 3.259 16 H -0.205 1.205 17 H -0.219 1.219 18 H -0.219 1.219 19 C 0.028 3.972 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.045 0.955 25 H 0.092 0.908 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.033 0.967 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.269 -10.828 6.788 14.702 hybrid contribution 0.355 0.336 0.079 0.495 sum -6.914 -10.492 6.867 14.319 Atomic orbital electron populations 1.21802 0.95151 1.01094 1.02551 1.22069 0.95962 0.89407 1.00351 1.61982 1.14667 1.15037 1.34653 1.22459 1.00838 0.99984 0.89424 1.22127 0.86142 0.97800 0.99760 1.22353 0.95956 0.94063 0.99504 0.90871 1.22900 0.94584 1.00464 0.99941 1.21090 0.88939 0.91904 0.92691 1.44558 1.11595 1.26960 1.50517 1.19139 0.98938 1.00564 1.16301 0.90465 1.24791 0.96254 0.99248 1.00538 1.69986 1.05047 1.36327 1.45992 0.86057 0.77307 0.82175 0.80362 1.20538 1.21881 1.21871 1.21422 0.93575 0.90611 0.91635 0.92703 0.92805 0.91713 0.90959 0.95497 0.90771 0.96199 0.91589 0.95405 0.90902 0.92603 0.92690 0.93846 0.94210 0.93990 0.96722 0.94223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.84 37.16 0.37 -1.12 16 2 C 0.05 0.58 5.68 -3.82 -0.02 0.55 16 3 N -0.54 -7.54 4.71 -242.91 -1.14 -8.69 16 4 C 0.02 0.27 9.15 60.07 0.55 0.82 16 5 C 0.07 1.04 4.41 -3.82 -0.02 1.03 16 6 C -0.10 -1.82 2.99 -88.47 -0.26 -2.08 16 7 H 0.07 1.37 6.30 -51.93 -0.33 1.04 16 8 C -0.14 -2.73 6.42 -24.90 -0.16 -2.89 16 9 C 0.18 4.54 5.37 -3.06 -0.02 4.53 16 10 N -0.61 -16.42 3.39 -170.08 -0.58 -17.00 16 11 C -0.22 -6.44 10.28 -15.06 -0.15 -6.59 16 12 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 13 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 14 N -0.92 -28.14 10.31 55.49 0.57 -27.57 16 15 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 18 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 19 C 0.15 3.40 6.65 -2.53 -0.02 3.38 16 20 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 21 H 0.05 0.52 6.47 -51.93 -0.34 0.18 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.07 0.82 7.93 -51.93 -0.41 0.40 16 24 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 25 H 0.07 1.02 6.33 -51.93 -0.33 0.70 16 26 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.74 6.30 -51.93 -0.33 0.41 16 28 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 29 H 0.07 1.09 7.75 -51.93 -0.40 0.69 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 32 H 0.04 1.21 7.38 -51.93 -0.38 0.83 16 33 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 34 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.02 0.33 7.91 -51.93 -0.41 -0.08 16 36 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 280.58 15.07 4.23 4.23 Total: -1.00 -31.07 280.58 -8.01 -39.08 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -6.24 Total: -4.99 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 0.17 Total: -2.84 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -1.15 Total: -53.26 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.07 -8.01 -39.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610394855.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.247 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds