Wall clock time and date at job start Sun Mar 29 2020 21:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99959 * 2 1 4 4 H 1.08002 * 119.99930 * 162.88625 * 3 2 1 5 5 C 1.38809 * 120.00100 * 342.88631 * 3 2 1 6 6 N 1.31620 * 120.00330 * 339.26932 * 5 3 2 7 7 Si 1.86803 * 119.99937 * 159.54228 * 5 3 2 8 8 H 1.48500 * 109.47196 * 264.74191 * 7 5 3 9 9 H 1.48508 * 109.47097 * 24.73953 * 7 5 3 10 10 H 1.48497 * 109.47325 * 144.74074 * 7 5 3 11 11 C 1.46495 * 119.99754 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47375 * 269.99862 * 11 2 1 13 13 C 1.52998 * 109.47442 * 184.79008 * 12 11 2 14 14 H 1.09002 * 109.90623 * 52.27573 * 13 12 11 15 15 C 1.53992 * 109.91640 * 173.37941 * 13 12 11 16 16 C 1.54590 * 105.14184 * 120.57812 * 15 13 12 17 17 C 1.54937 * 102.92144 * 21.95568 * 16 15 13 18 18 N 1.47894 * 109.91648 * 291.17336 * 13 12 11 19 19 C 1.46899 * 111.00082 * 94.80479 * 18 13 12 20 20 H 1.08995 * 109.47272 * 85.77308 * 1 2 3 21 21 H 1.08998 * 109.47168 * 205.78282 * 1 2 3 22 22 H 1.09008 * 109.46717 * 325.77688 * 1 2 3 23 23 H 0.96999 * 120.00271 * 180.27365 * 6 5 3 24 24 H 1.09000 * 109.47273 * 29.99824 * 11 2 1 25 25 H 1.09005 * 109.47137 * 150.00391 * 11 2 1 26 26 H 1.09007 * 109.46746 * 304.78949 * 12 11 2 27 27 H 1.09000 * 109.47106 * 64.78370 * 12 11 2 28 28 H 1.09006 * 110.30665 * 239.49667 * 15 13 12 29 29 H 1.08999 * 110.31437 * 1.55792 * 15 13 12 30 30 H 1.08998 * 110.72643 * 140.31307 * 16 15 13 31 31 H 1.09000 * 110.72837 * 263.59771 * 16 15 13 32 32 H 1.09001 * 110.66905 * 81.02205 * 17 16 15 33 33 H 1.09002 * 110.66945 * 203.98261 * 17 16 15 34 34 H 1.09000 * 109.47388 * 66.26780 * 19 18 13 35 35 H 1.09004 * 109.46918 * 186.26588 * 19 18 13 36 36 H 1.08996 * 109.46829 * 306.26328 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1939 1.2066 0.2752 5 6 1.5018 2.3614 -0.3537 6 7 0.3946 2.3146 -1.0639 7 14 2.2053 4.0102 0.1717 8 1 1.5491 4.4504 1.4290 9 1 3.6670 3.8755 0.3970 10 1 1.9592 5.0154 -0.8933 11 6 2.1974 -1.2687 -0.0006 12 6 2.4525 -1.7111 1.4417 13 6 3.3194 -2.9718 1.4429 14 1 4.2121 -2.8089 0.8390 15 6 3.7202 -3.3315 2.8855 16 6 3.1566 -4.7519 3.1190 17 6 2.9973 -5.3024 1.6795 18 7 2.5487 -4.1136 0.9048 19 6 2.8018 -4.2896 -0.5315 20 1 -0.3633 0.0757 -1.0248 21 1 -0.3633 -0.9253 0.4470 22 1 -0.3633 0.8498 0.5780 23 1 -0.0560 3.1362 -1.3145 24 1 1.6083 -2.0281 -0.5147 25 1 3.1499 -1.1382 -0.5143 26 1 2.9676 -0.9154 1.9801 27 1 1.5015 -1.9235 1.9302 28 1 4.8055 -3.3336 2.9873 29 1 3.2765 -2.6265 3.5885 30 1 3.8617 -5.3580 3.6879 31 1 2.1914 -4.7059 3.6234 32 1 3.9513 -5.6681 1.2997 33 1 2.2453 -6.0909 1.6501 34 1 3.8394 -4.5867 -0.6839 35 1 2.1411 -5.0622 -0.9248 36 1 2.6126 -3.3505 -1.0514 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611158378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:58 Heat of formation + Delta-G solvation = 23.609639 kcal Electronic energy + Delta-G solvation = -14708.878449 eV Core-core repulsion = 12421.589314 eV Total energy + Delta-G solvation = -2287.289135 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.01985 -35.56209 -32.22393 -32.03223 -30.22431 -26.81987 -25.71164 -25.46925 -22.92194 -21.12567 -20.12348 -19.73673 -16.58097 -15.82903 -15.32296 -14.84895 -14.49963 -13.55405 -13.51425 -13.03777 -12.89632 -12.33904 -12.32029 -11.96101 -11.53060 -11.33913 -11.08904 -11.00324 -10.88681 -10.71676 -10.42771 -10.28170 -10.26354 -9.97128 -9.69441 -9.59899 -8.41486 -8.21610 -6.66876 -5.64391 -3.01502 3.44294 3.51044 3.52409 4.17601 4.58824 4.76421 4.84103 5.08487 5.30774 5.47082 5.52661 5.57458 5.59929 5.66561 5.84091 5.86707 5.90739 6.04865 6.08383 6.19775 6.21916 6.35067 6.58754 6.65705 6.89223 6.89771 7.12619 7.16422 7.32493 7.50331 7.78918 7.90435 8.47813 9.33593 10.00717 10.48726 11.41896 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048754 B = 0.007046 C = 0.006592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.169985 B = 3972.946771 C = 4246.651228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.606 5.606 3 C -0.250 4.250 4 H 0.068 0.932 5 C -0.003 4.003 6 N -0.906 5.906 7 Si 0.897 3.103 8 H -0.289 1.289 9 H -0.280 1.280 10 H -0.293 1.293 11 C 0.153 3.847 12 C -0.121 4.121 13 C 0.068 3.932 14 H 0.048 0.952 15 C -0.128 4.128 16 C -0.123 4.123 17 C 0.033 3.967 18 N -0.514 5.514 19 C 0.009 3.991 20 H 0.024 0.976 21 H 0.000 1.000 22 H 0.041 0.959 23 H 0.251 0.749 24 H 0.042 0.958 25 H 0.036 0.964 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.022 0.978 35 H 0.064 0.936 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.304 -13.473 5.537 15.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.329 5.329 3 C -0.380 4.380 4 H 0.086 0.914 5 C -0.201 4.201 6 N -0.552 5.552 7 Si 0.728 3.272 8 H -0.217 1.217 9 H -0.206 1.206 10 H -0.220 1.220 11 C 0.026 3.974 12 C -0.162 4.162 13 C -0.041 4.041 14 H 0.066 0.934 15 C -0.166 4.166 16 C -0.161 4.161 17 C -0.095 4.095 18 N -0.238 5.238 19 C -0.139 4.139 20 H 0.042 0.958 21 H 0.019 0.981 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.630 -13.236 5.490 15.058 hybrid contribution 1.210 0.829 0.083 1.470 sum 5.841 -12.406 5.573 14.801 Atomic orbital electron populations 1.20737 0.82723 0.95692 0.98973 1.43982 1.01888 1.00859 1.86148 1.19224 0.95253 0.84656 1.38839 0.91370 1.24840 0.98171 0.97955 0.99098 1.70148 1.20580 1.26249 1.38182 0.86329 0.78438 0.84407 0.78025 1.21669 1.20559 1.21963 1.20843 0.95380 0.87980 0.93206 1.22238 0.98999 0.93543 1.01383 1.22482 0.95049 0.92433 0.94146 0.93406 1.22479 1.00117 0.96967 0.97068 1.22452 1.01308 0.96023 0.96277 1.23280 0.98534 0.94018 0.93656 1.64726 1.53385 1.02634 1.03055 1.22693 0.98617 1.03234 0.89379 0.95768 0.98135 0.93999 0.93918 0.93968 0.94546 0.92001 0.92105 0.92020 0.90727 0.91585 0.90849 0.94295 0.90492 0.95976 0.91724 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.27 9.00 59.85 0.54 4.80 16 2 N -0.61 -16.01 2.93 -181.12 -0.53 -16.54 16 3 C -0.25 -7.15 9.66 -15.06 -0.15 -7.30 16 4 H 0.07 1.90 7.91 -52.49 -0.42 1.49 16 5 C 0.00 -0.08 4.94 -17.43 -0.09 -0.17 16 6 N -0.91 -27.42 10.84 55.49 0.60 -26.82 16 7 Si 0.90 22.45 29.60 -169.99 -5.03 17.42 16 8 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 11 C 0.15 3.30 4.50 -4.04 -0.02 3.28 16 12 C -0.12 -2.26 4.98 -26.73 -0.13 -2.39 16 13 C 0.07 1.03 2.58 -66.65 -0.17 0.86 16 14 H 0.05 0.74 7.77 -51.93 -0.40 0.34 16 15 C -0.13 -1.64 6.57 -25.38 -0.17 -1.81 16 16 C -0.12 -1.37 7.06 -24.87 -0.18 -1.54 16 17 C 0.03 0.39 6.58 -1.74 -0.01 0.38 16 18 N -0.51 -7.49 5.09 -230.55 -1.17 -8.66 16 19 C 0.01 0.13 9.14 60.06 0.55 0.68 16 20 H 0.02 0.67 7.53 -51.93 -0.39 0.28 16 21 H 0.00 0.00 8.04 -51.93 -0.42 -0.42 16 22 H 0.04 1.16 7.09 -51.92 -0.37 0.79 16 23 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.04 0.88 6.12 -51.93 -0.32 0.56 16 25 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.98 7.69 -51.93 -0.40 0.58 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.43 7.87 -51.93 -0.41 0.02 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.02 0.27 7.93 -51.93 -0.41 -0.14 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.24 5.24 -51.93 -0.27 0.97 16 LS Contribution 281.33 15.07 4.24 4.24 Total: -1.00 -30.69 281.33 -8.03 -38.72 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -6.32 Total: -5.15 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 0.18 Total: -3.21 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -1.10 Total: -52.02 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.42 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.69 -8.03 -38.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611158378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.329 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds