Wall clock time and date at job start Sun Mar 29 2020 21:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99959 * 2 1 4 4 H 1.08002 * 119.99930 * 162.88625 * 3 2 1 5 5 C 1.38809 * 120.00100 * 342.88631 * 3 2 1 6 6 N 1.31620 * 120.00330 * 339.26932 * 5 3 2 7 7 Si 1.86803 * 119.99937 * 159.54228 * 5 3 2 8 8 H 1.48500 * 109.47196 * 264.74191 * 7 5 3 9 9 H 1.48508 * 109.47097 * 24.73953 * 7 5 3 10 10 H 1.48497 * 109.47325 * 144.74074 * 7 5 3 11 11 C 1.46495 * 119.99754 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47375 * 269.99862 * 11 2 1 13 13 C 1.52998 * 109.47442 * 184.79008 * 12 11 2 14 14 H 1.09002 * 109.90623 * 52.27573 * 13 12 11 15 15 C 1.53992 * 109.91640 * 173.37941 * 13 12 11 16 16 C 1.54590 * 105.14184 * 120.57812 * 15 13 12 17 17 C 1.54937 * 102.92144 * 21.95568 * 16 15 13 18 18 N 1.47894 * 109.91648 * 291.17336 * 13 12 11 19 19 C 1.46899 * 111.00082 * 94.80479 * 18 13 12 20 20 H 1.08995 * 109.47272 * 85.77308 * 1 2 3 21 21 H 1.08998 * 109.47168 * 205.78282 * 1 2 3 22 22 H 1.09008 * 109.46717 * 325.77688 * 1 2 3 23 23 H 0.96999 * 120.00271 * 180.27365 * 6 5 3 24 24 H 1.09000 * 109.47273 * 29.99824 * 11 2 1 25 25 H 1.09005 * 109.47137 * 150.00391 * 11 2 1 26 26 H 1.09007 * 109.46746 * 304.78949 * 12 11 2 27 27 H 1.09000 * 109.47106 * 64.78370 * 12 11 2 28 28 H 1.09006 * 110.30665 * 239.49667 * 15 13 12 29 29 H 1.08999 * 110.31437 * 1.55792 * 15 13 12 30 30 H 1.08998 * 110.72643 * 140.31307 * 16 15 13 31 31 H 1.09000 * 110.72837 * 263.59771 * 16 15 13 32 32 H 1.09001 * 110.66905 * 81.02205 * 17 16 15 33 33 H 1.09002 * 110.66945 * 203.98261 * 17 16 15 34 34 H 1.09000 * 109.47388 * 66.26780 * 19 18 13 35 35 H 1.09004 * 109.46918 * 186.26588 * 19 18 13 36 36 H 1.08996 * 109.46829 * 306.26328 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1939 1.2066 0.2752 5 6 1.5018 2.3614 -0.3537 6 7 0.3946 2.3146 -1.0639 7 14 2.2053 4.0102 0.1717 8 1 1.5491 4.4504 1.4290 9 1 3.6670 3.8755 0.3970 10 1 1.9592 5.0154 -0.8933 11 6 2.1974 -1.2687 -0.0006 12 6 2.4525 -1.7111 1.4417 13 6 3.3194 -2.9718 1.4429 14 1 4.2121 -2.8089 0.8390 15 6 3.7202 -3.3315 2.8855 16 6 3.1566 -4.7519 3.1190 17 6 2.9973 -5.3024 1.6795 18 7 2.5487 -4.1136 0.9048 19 6 2.8018 -4.2896 -0.5315 20 1 -0.3633 0.0757 -1.0248 21 1 -0.3633 -0.9253 0.4470 22 1 -0.3633 0.8498 0.5780 23 1 -0.0560 3.1362 -1.3145 24 1 1.6083 -2.0281 -0.5147 25 1 3.1499 -1.1382 -0.5143 26 1 2.9676 -0.9154 1.9801 27 1 1.5015 -1.9235 1.9302 28 1 4.8055 -3.3336 2.9873 29 1 3.2765 -2.6265 3.5885 30 1 3.8617 -5.3580 3.6879 31 1 2.1914 -4.7059 3.6234 32 1 3.9513 -5.6681 1.2997 33 1 2.2453 -6.0909 1.6501 34 1 3.8394 -4.5867 -0.6839 35 1 2.1411 -5.0622 -0.9248 36 1 2.6126 -3.3505 -1.0514 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611158378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:58 Heat of formation + Delta-G solvation = 3.955161 kcal Electronic energy + Delta-G solvation = -14709.730731 eV Core-core repulsion = 12421.589314 eV Total energy + Delta-G solvation = -2288.141417 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.14779 -37.51271 -34.02785 -33.06585 -31.99495 -28.33138 -27.82098 -26.57595 -24.65358 -22.35029 -21.69744 -20.95298 -18.70310 -16.96071 -16.89592 -16.28172 -15.99222 -15.45886 -14.84294 -14.55172 -14.47507 -13.76293 -13.70856 -13.28791 -13.04819 -12.87778 -12.80914 -12.56339 -12.35555 -12.10606 -12.08319 -11.97502 -11.80890 -11.61968 -11.37288 -11.26712 -10.57809 -9.31920 -8.80331 -7.83891 -5.24226 1.45508 1.47710 1.56746 2.52238 3.12071 3.27328 3.63786 3.79622 3.91146 4.10162 4.28477 4.45558 4.48432 4.57219 4.60207 4.66141 4.79460 4.84836 4.88010 4.97132 5.03641 5.05721 5.10897 5.20987 5.28916 5.33940 5.38461 5.56724 5.60804 5.67816 6.06387 6.19477 6.31435 7.14697 7.89770 8.33317 9.21207 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048754 B = 0.007046 C = 0.006592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.169985 B = 3972.946771 C = 4246.651228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.624 5.624 3 C -0.261 4.261 4 H 0.071 0.929 5 C -0.058 4.058 6 N -0.939 5.939 7 Si 0.966 3.034 8 H -0.288 1.288 9 H -0.267 1.267 10 H -0.295 1.295 11 C 0.155 3.845 12 C -0.105 4.105 13 C 0.071 3.929 14 H 0.045 0.955 15 C -0.127 4.127 16 C -0.117 4.117 17 C 0.033 3.967 18 N -0.534 5.534 19 C 0.011 3.989 20 H 0.000 1.000 21 H 0.028 0.972 22 H 0.017 0.983 23 H 0.248 0.752 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.561 -14.697 6.610 17.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.347 5.347 3 C -0.391 4.391 4 H 0.089 0.911 5 C -0.253 4.253 6 N -0.587 5.587 7 Si 0.794 3.206 8 H -0.215 1.215 9 H -0.192 1.192 10 H -0.221 1.221 11 C 0.030 3.970 12 C -0.145 4.145 13 C -0.038 4.038 14 H 0.063 0.937 15 C -0.165 4.165 16 C -0.155 4.155 17 C -0.094 4.094 18 N -0.259 5.259 19 C -0.137 4.137 20 H 0.018 0.982 21 H 0.046 0.954 22 H 0.036 0.964 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.913 -14.499 6.576 16.983 hybrid contribution 0.819 1.131 -0.282 1.424 sum 6.732 -13.368 6.294 16.237 Atomic orbital electron populations 1.20475 0.82968 0.95924 0.97243 1.44283 1.02150 1.02014 1.86293 1.19550 0.95596 0.85785 1.38219 0.91134 1.25658 0.98886 1.01397 0.99323 1.70297 1.22070 1.26850 1.39454 0.85262 0.78360 0.79772 0.77195 1.21460 1.19154 1.22142 1.20981 0.94611 0.86222 0.95205 1.21977 0.99036 0.95047 0.98477 1.22346 0.94014 0.91302 0.96098 0.93666 1.22465 1.01186 0.97959 0.94928 1.22461 1.01728 0.95081 0.96195 1.23362 0.99424 0.93108 0.93481 1.64666 1.53870 1.03574 1.03748 1.22648 0.99731 1.02480 0.88843 0.98216 0.95376 0.96421 0.94283 0.93323 0.95040 0.93402 0.93201 0.90426 0.91410 0.89026 0.91218 0.93118 0.89399 0.94738 0.90454 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.50 9.00 127.77 1.15 10.65 16 2 N -0.62 -33.31 2.93 -726.93 -2.13 -35.44 16 3 C -0.26 -15.04 9.66 84.03 0.81 -14.23 16 4 H 0.07 3.94 7.91 -2.91 -0.02 3.91 16 5 C -0.06 -3.38 4.94 84.86 0.42 -2.96 16 6 N -0.94 -57.92 10.84 21.65 0.23 -57.68 16 7 Si 0.97 46.44 29.60 68.60 2.03 48.47 16 8 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 11 C 0.16 6.70 4.50 86.38 0.39 7.09 16 12 C -0.10 -3.87 4.98 30.59 0.15 -3.71 16 13 C 0.07 2.07 2.58 45.06 0.12 2.18 16 14 H 0.05 1.33 7.77 -2.39 -0.02 1.31 16 15 C -0.13 -2.95 6.57 31.47 0.21 -2.74 16 16 C -0.12 -2.23 7.06 31.80 0.22 -2.01 16 17 C 0.03 0.69 6.58 86.59 0.57 1.26 16 18 N -0.53 -14.50 5.09 -883.32 -4.50 -19.00 16 19 C 0.01 0.29 9.14 127.69 1.17 1.46 16 20 H 0.00 -0.02 7.53 -2.39 -0.02 -0.04 16 21 H 0.03 1.29 8.04 -2.39 -0.02 1.27 16 22 H 0.02 0.98 7.09 -2.38 -0.02 0.96 16 23 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 24 H 0.05 2.03 6.12 -2.39 -0.01 2.02 16 25 H 0.03 1.37 8.04 -2.38 -0.02 1.35 16 26 H 0.05 1.87 8.14 -2.38 -0.02 1.86 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.07 1.66 7.69 -2.39 -0.02 1.64 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 0.94 7.87 -2.39 -0.02 0.92 16 33 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.03 0.78 7.93 -2.39 -0.02 0.76 16 35 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.06 1.79 5.24 -2.39 -0.01 1.77 16 Total: -1.00 -65.21 281.33 1.86 -63.35 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: 1.02 Total: 3.32 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 5.21 Total: -3.02 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -6.39 Total: -112.12 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -65.21 1.86 -63.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611158378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.307 kcal (2) G-P(sol) polarization free energy of solvation -65.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds