Wall clock time and date at job start Sun Mar 29 2020 21:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.45800 * 2 1 4 4 C 1.53037 * 109.46365 * 119.97918 * 2 1 3 5 5 C 1.53114 * 109.31211 * 60.85389 * 4 2 1 6 6 H 1.09007 * 109.52681 * 297.73305 * 5 4 2 7 7 N 1.46898 * 109.52587 * 177.60654 * 5 4 2 8 8 C 1.46896 * 111.00251 * 56.04326 * 7 5 4 9 9 C 1.46897 * 111.00230 * 180.02562 * 7 5 4 10 10 C 1.50699 * 109.47028 * 169.99832 * 9 7 5 11 11 H 1.07997 * 120.00453 * 359.97438 * 10 9 7 12 12 C 1.37878 * 119.99957 * 180.02562 * 10 9 7 13 13 N 1.31512 * 120.00185 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00081 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46882 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.46987 * 119.99971 * 14 12 10 17 17 H 1.48496 * 109.46908 * 239.99621 * 14 12 10 18 18 C 1.53125 * 109.16368 * 57.63311 * 5 4 2 19 19 C 1.53035 * 109.27580 * 302.35133 * 18 5 4 20 20 N 1.46840 * 109.52994 * 59.17458 * 19 18 5 21 21 H 1.08997 * 109.47194 * 300.02459 * 1 2 3 22 22 H 1.09003 * 109.47353 * 60.02208 * 1 2 3 23 23 H 1.08997 * 109.47365 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.50283 * 300.89206 * 4 2 1 25 25 H 1.09003 * 109.50113 * 180.81394 * 4 2 1 26 26 H 1.09000 * 109.46991 * 60.00248 * 8 7 5 27 27 H 1.08997 * 109.47630 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.47200 * 300.00268 * 8 7 5 29 29 H 1.08994 * 109.47296 * 289.99642 * 9 7 5 30 30 H 1.09002 * 109.47256 * 49.99461 * 9 7 5 31 31 H 0.96999 * 120.00615 * 179.97438 * 13 12 10 32 32 H 1.09005 * 109.49488 * 62.28510 * 18 5 4 33 33 H 1.08998 * 109.50470 * 182.40590 * 18 5 4 34 34 H 1.09001 * 109.46056 * 179.19389 * 19 18 5 35 35 H 1.09005 * 109.46120 * 299.15195 * 19 18 5 36 36 H 1.00891 * 111.00536 * 174.15753 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 1.5451 -2.1699 1.2359 6 1 0.4556 -2.1832 1.2679 7 7 2.0791 -2.8824 2.4043 8 6 1.7181 -2.1941 3.6509 9 6 1.6239 -4.2789 2.4227 10 6 2.3779 -5.0390 3.4833 11 1 3.1211 -4.5352 4.0834 12 6 2.1195 -6.3780 3.6869 13 7 1.2148 -6.9917 2.9558 14 14 3.0546 -7.3204 5.0011 15 1 4.0103 -6.4080 5.6789 16 1 2.0963 -7.8632 5.9972 17 1 3.8007 -8.4393 4.3714 18 6 2.0276 -2.8535 -0.0465 19 6 1.5172 -2.0713 -1.2587 20 7 2.0183 -0.6923 -1.1995 21 1 -0.3633 0.5142 0.8897 22 1 -0.3634 0.5135 -0.8902 23 1 -0.3634 -1.0276 0.0005 24 1 1.6638 -0.2165 2.1399 25 1 3.1298 -0.7087 1.2578 26 1 0.6327 -2.1450 3.7376 27 1 2.1263 -2.7423 4.5000 28 1 2.1279 -1.1841 3.6401 29 1 0.5569 -4.3105 2.6425 30 1 1.8080 -4.7339 1.4494 31 1 1.0333 -7.9338 3.0987 32 1 3.1173 -2.8748 -0.0595 33 1 1.6426 -3.8727 -0.0826 34 1 1.8710 -2.5473 -2.1733 35 1 0.4272 -2.0622 -1.2525 36 1 1.7746 -0.1827 -2.0355 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642847415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:50 Heat of formation + Delta-G solvation = 0.193150 kcal Electronic energy + Delta-G solvation = -14949.375581 eV Core-core repulsion = 12661.071031 eV Total energy + Delta-G solvation = -2288.304550 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.25213 -35.92442 -32.58381 -31.58720 -30.24686 -27.68116 -26.53818 -25.10362 -22.48252 -22.05096 -20.12594 -18.38716 -16.81449 -16.06336 -14.91292 -14.74393 -14.39284 -13.81920 -13.70303 -13.52020 -12.83711 -12.69200 -12.32094 -11.95319 -11.79269 -11.55114 -11.24095 -10.97348 -10.83998 -10.74440 -10.51388 -10.41146 -10.02972 -9.93807 -9.42601 -9.10092 -8.38669 -8.28119 -7.14114 -5.99508 -3.99985 3.32906 3.40175 3.45485 4.34925 4.45130 4.87550 5.03224 5.15822 5.31911 5.35902 5.46314 5.53574 5.64831 5.80277 5.82307 5.96961 6.00347 6.09536 6.22474 6.29268 6.32790 6.42378 6.49814 6.69116 6.80239 6.90830 7.21292 7.38475 7.40023 7.53304 7.85907 8.16212 8.28086 8.62757 9.08283 9.63897 11.11484 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053212 B = 0.007367 C = 0.006944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.072905 B = 3800.011415 C = 4031.475805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.085 3.915 3 H 0.077 0.923 4 C -0.105 4.105 5 C 0.086 3.914 6 H 0.025 0.975 7 N -0.537 5.537 8 C 0.036 3.964 9 C 0.189 3.811 10 C -0.504 4.504 11 H 0.063 0.937 12 C 0.054 3.946 13 N -0.900 5.900 14 Si 0.897 3.103 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.284 1.284 18 C -0.110 4.110 19 C 0.057 3.943 20 N -0.683 5.683 21 H 0.058 0.942 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.007 0.993 27 H 0.073 0.927 28 H 0.047 0.953 29 H -0.013 1.013 30 H 0.036 0.964 31 H 0.260 0.740 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.030 0.970 36 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.196 12.115 -6.165 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.025 4.025 3 H 0.096 0.904 4 C -0.143 4.143 5 C -0.023 4.023 6 H 0.043 0.957 7 N -0.261 5.261 8 C -0.112 4.112 9 C 0.064 3.936 10 C -0.543 4.543 11 H 0.081 0.919 12 C -0.147 4.147 13 N -0.540 5.540 14 Si 0.725 3.275 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.210 1.210 18 C -0.148 4.148 19 C -0.073 4.073 20 N -0.313 5.313 21 H 0.077 0.923 22 H 0.067 0.933 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.025 0.975 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.004 0.996 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.159 11.740 -5.926 13.152 hybrid contribution -1.528 -0.519 0.517 1.695 sum -1.687 11.221 -5.408 12.570 Atomic orbital electron populations 1.22594 0.98205 1.02581 1.01503 1.21546 0.92133 0.97487 0.91344 0.90445 1.21689 1.02024 0.95114 0.95435 1.21567 0.95552 0.93008 0.92160 0.95700 1.62135 1.59480 1.04326 1.00163 1.22233 0.96990 0.97719 0.94285 1.19790 0.93534 0.82186 0.98070 1.21235 1.21010 0.94136 1.17921 0.91854 1.24991 0.95462 0.97679 0.96581 1.69968 1.33145 1.10694 1.40187 0.86459 0.79717 0.79841 0.81514 1.19670 1.21182 1.21024 1.21663 1.02383 0.98558 0.92164 1.21979 0.97050 0.88997 0.99266 1.60484 1.63245 1.03126 1.04408 0.92284 0.93289 0.91725 0.91996 0.90565 0.97460 0.90864 0.93408 0.99564 0.94605 0.93063 0.90565 0.90880 0.91100 0.95182 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.28 8.59 37.16 0.32 -1.96 16 2 C 0.09 1.09 3.68 -67.72 -0.25 0.85 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.10 -1.62 4.45 -26.65 -0.12 -1.74 16 5 C 0.09 1.60 1.70 -67.59 -0.11 1.49 16 6 H 0.03 0.49 6.56 -51.93 -0.34 0.15 16 7 N -0.54 -11.95 4.62 -236.19 -1.09 -13.04 16 8 C 0.04 0.73 8.92 60.06 0.54 1.27 16 9 C 0.19 5.03 4.54 -4.98 -0.02 5.00 16 10 C -0.50 -14.44 8.46 -34.44 -0.29 -14.73 16 11 H 0.06 1.80 7.12 -52.49 -0.37 1.43 16 12 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 14 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 18 C -0.11 -1.96 5.11 -26.65 -0.14 -2.10 16 19 C 0.06 0.80 6.25 -3.84 -0.02 0.78 16 20 N -0.68 -8.83 6.65 -106.76 -0.71 -9.54 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.89 4.80 -51.93 -0.25 0.64 16 24 H 0.06 0.91 6.50 -51.93 -0.34 0.58 16 25 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.07 1.58 6.76 -51.93 -0.35 1.22 16 28 H 0.05 0.82 6.29 -51.93 -0.33 0.50 16 29 H -0.01 -0.39 8.12 -51.93 -0.42 -0.81 16 30 H 0.04 1.00 5.90 -51.93 -0.31 0.69 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.07 1.44 6.35 -51.93 -0.33 1.11 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.03 0.42 6.19 -51.93 -0.32 0.10 16 36 H 0.33 3.52 8.90 -39.30 -0.35 3.17 16 LS Contribution 271.37 15.07 4.09 4.09 Total: -1.00 -30.02 271.37 -8.00 -38.02 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.80 Total: -0.43 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -0.20 Total: -9.69 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -1.06 Total: -48.90 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.02 -8.00 -38.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642847415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.214 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds