Wall clock time and date at job start Sun Mar 29 2020 21:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.45800 * 2 1 4 4 C 1.53037 * 109.46365 * 119.97918 * 2 1 3 5 5 C 1.53114 * 109.31211 * 60.85389 * 4 2 1 6 6 H 1.09007 * 109.52681 * 297.73305 * 5 4 2 7 7 N 1.46898 * 109.52587 * 177.60654 * 5 4 2 8 8 C 1.46896 * 111.00251 * 56.04326 * 7 5 4 9 9 C 1.46897 * 111.00230 * 180.02562 * 7 5 4 10 10 C 1.50699 * 109.47028 * 169.99832 * 9 7 5 11 11 H 1.07997 * 120.00453 * 359.97438 * 10 9 7 12 12 C 1.37878 * 119.99957 * 180.02562 * 10 9 7 13 13 N 1.31512 * 120.00185 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00081 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46882 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.46987 * 119.99971 * 14 12 10 17 17 H 1.48496 * 109.46908 * 239.99621 * 14 12 10 18 18 C 1.53125 * 109.16368 * 57.63311 * 5 4 2 19 19 C 1.53035 * 109.27580 * 302.35133 * 18 5 4 20 20 N 1.46840 * 109.52994 * 59.17458 * 19 18 5 21 21 H 1.08997 * 109.47194 * 300.02459 * 1 2 3 22 22 H 1.09003 * 109.47353 * 60.02208 * 1 2 3 23 23 H 1.08997 * 109.47365 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.50283 * 300.89206 * 4 2 1 25 25 H 1.09003 * 109.50113 * 180.81394 * 4 2 1 26 26 H 1.09000 * 109.46991 * 60.00248 * 8 7 5 27 27 H 1.08997 * 109.47630 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.47200 * 300.00268 * 8 7 5 29 29 H 1.08994 * 109.47296 * 289.99642 * 9 7 5 30 30 H 1.09002 * 109.47256 * 49.99461 * 9 7 5 31 31 H 0.96999 * 120.00615 * 179.97438 * 13 12 10 32 32 H 1.09005 * 109.49488 * 62.28510 * 18 5 4 33 33 H 1.08998 * 109.50470 * 182.40590 * 18 5 4 34 34 H 1.09001 * 109.46056 * 179.19389 * 19 18 5 35 35 H 1.09005 * 109.46120 * 299.15195 * 19 18 5 36 36 H 1.00891 * 111.00536 * 174.15753 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 1.5451 -2.1699 1.2359 6 1 0.4556 -2.1832 1.2679 7 7 2.0791 -2.8824 2.4043 8 6 1.7181 -2.1941 3.6509 9 6 1.6239 -4.2789 2.4227 10 6 2.3779 -5.0390 3.4833 11 1 3.1211 -4.5352 4.0834 12 6 2.1195 -6.3780 3.6869 13 7 1.2148 -6.9917 2.9558 14 14 3.0546 -7.3204 5.0011 15 1 4.0103 -6.4080 5.6789 16 1 2.0963 -7.8632 5.9972 17 1 3.8007 -8.4393 4.3714 18 6 2.0276 -2.8535 -0.0465 19 6 1.5172 -2.0713 -1.2587 20 7 2.0183 -0.6923 -1.1995 21 1 -0.3633 0.5142 0.8897 22 1 -0.3634 0.5135 -0.8902 23 1 -0.3634 -1.0276 0.0005 24 1 1.6638 -0.2165 2.1399 25 1 3.1298 -0.7087 1.2578 26 1 0.6327 -2.1450 3.7376 27 1 2.1263 -2.7423 4.5000 28 1 2.1279 -1.1841 3.6401 29 1 0.5569 -4.3105 2.6425 30 1 1.8080 -4.7339 1.4494 31 1 1.0333 -7.9338 3.0987 32 1 3.1173 -2.8748 -0.0595 33 1 1.6426 -3.8727 -0.0826 34 1 1.8710 -2.5473 -2.1733 35 1 0.4272 -2.0622 -1.2525 36 1 1.7746 -0.1827 -2.0355 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642847415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:50 Heat of formation + Delta-G solvation = -22.063261 kcal Electronic energy + Delta-G solvation = -14950.340692 eV Core-core repulsion = 12661.071031 eV Total energy + Delta-G solvation = -2289.269660 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.57802 -37.52945 -34.71227 -32.78824 -31.75597 -29.40010 -27.90738 -26.85247 -24.23192 -23.36668 -21.78593 -19.67997 -18.64572 -17.64003 -16.76560 -16.10015 -15.89487 -15.48028 -15.12678 -15.03323 -14.29535 -13.90928 -13.85660 -13.74735 -13.15369 -13.06928 -12.83332 -12.69886 -12.62032 -12.19923 -12.15090 -11.95650 -11.79873 -11.41612 -11.09985 -10.96195 -10.59029 -9.32281 -8.98614 -8.21141 -6.31059 1.39641 1.40563 1.54395 2.39701 3.10822 3.28639 3.31438 3.86659 3.92440 4.15927 4.24777 4.34040 4.45532 4.50064 4.58158 4.60431 4.71750 4.77856 4.86103 4.97584 5.04754 5.09115 5.14246 5.17194 5.25288 5.32220 5.35955 5.49353 5.66623 6.07088 6.10449 6.36823 6.62531 6.68591 6.85863 7.38533 8.90217 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053212 B = 0.007367 C = 0.006944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.072905 B = 3800.011415 C = 4031.475805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.089 3.911 3 H 0.104 0.896 4 C -0.098 4.098 5 C 0.084 3.916 6 H 0.016 0.984 7 N -0.547 5.547 8 C 0.039 3.961 9 C 0.207 3.793 10 C -0.524 4.524 11 H 0.062 0.938 12 C 0.000 4.000 13 N -0.935 5.935 14 Si 0.971 3.029 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.277 1.277 18 C -0.107 4.107 19 C 0.066 3.934 20 N -0.685 5.685 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.041 0.959 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.005 0.995 27 H 0.055 0.945 28 H 0.083 0.917 29 H -0.048 1.048 30 H 0.014 0.986 31 H 0.264 0.736 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.034 0.966 36 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.634 13.734 -6.214 15.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.021 4.021 3 H 0.122 0.878 4 C -0.136 4.136 5 C -0.024 4.024 6 H 0.033 0.967 7 N -0.271 5.271 8 C -0.109 4.109 9 C 0.080 3.920 10 C -0.562 4.562 11 H 0.080 0.920 12 C -0.198 4.198 13 N -0.576 5.576 14 Si 0.795 3.205 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.146 4.146 19 C -0.063 4.063 20 N -0.317 5.317 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.060 0.940 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.024 0.976 27 H 0.074 0.926 28 H 0.102 0.898 29 H -0.030 1.030 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.052 0.948 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.402 13.393 -5.990 14.677 hybrid contribution -1.720 -0.989 0.502 2.047 sum -1.318 12.404 -5.489 13.628 Atomic orbital electron populations 1.22537 0.97434 1.01498 1.02948 1.21562 0.92662 0.98136 0.89783 0.87770 1.21646 1.01333 0.92815 0.97776 1.21697 0.94984 0.94897 0.90829 0.96655 1.62094 1.59768 1.02837 1.02384 1.22238 0.96983 0.98972 0.92688 1.19417 0.91257 0.84937 0.96363 1.21535 1.21277 0.94901 1.18527 0.92007 1.25936 0.96286 0.98669 0.98883 1.70095 1.34495 1.11216 1.41788 0.85315 0.78425 0.78277 0.78486 1.18750 1.20325 1.20301 1.21588 1.01200 0.97752 0.94011 1.21815 0.97162 0.89644 0.97708 1.60398 1.63334 1.02497 1.05493 0.91663 0.91101 0.94002 0.90926 0.91551 0.97626 0.92608 0.89849 1.03014 0.96841 0.92706 0.92119 0.93956 0.89648 0.94761 0.82631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.94 8.59 71.98 0.62 -3.32 16 2 C 0.09 2.01 3.68 44.94 0.17 2.18 16 3 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 4 C -0.10 -2.86 4.45 30.64 0.14 -2.72 16 5 C 0.08 3.17 1.70 45.00 0.08 3.25 16 6 H 0.02 0.62 6.56 -2.38 -0.02 0.60 16 7 N -0.55 -24.90 4.62 -901.17 -4.17 -29.06 16 8 C 0.04 1.59 8.92 127.69 1.14 2.72 16 9 C 0.21 11.49 4.54 85.56 0.39 11.88 16 10 C -0.52 -30.78 8.46 25.60 0.22 -30.56 16 11 H 0.06 3.57 7.12 -2.91 -0.02 3.55 16 12 C 0.00 0.00 5.46 84.66 0.46 0.46 16 13 N -0.94 -57.57 13.29 21.45 0.28 -57.28 16 14 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 15 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 C -0.11 -3.94 5.11 30.65 0.16 -3.78 16 19 C 0.07 1.81 6.25 86.33 0.54 2.35 16 20 N -0.68 -15.92 6.65 -491.69 -3.27 -19.19 16 21 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.04 1.09 4.80 -2.39 -0.01 1.07 16 24 H 0.07 1.96 6.50 -2.39 -0.02 1.94 16 25 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.06 2.42 6.76 -2.39 -0.02 2.40 16 28 H 0.08 2.73 6.29 -2.39 -0.02 2.72 16 29 H -0.05 -2.92 8.12 -2.39 -0.02 -2.94 16 30 H 0.01 0.81 5.90 -2.39 -0.01 0.79 16 31 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 33 H 0.04 1.78 6.35 -2.39 -0.02 1.76 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.03 0.92 6.19 -2.38 -0.01 0.90 16 36 H 0.35 6.19 8.90 -89.70 -0.80 5.39 16 Total: -1.00 -65.95 271.37 -0.96 -66.92 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.26 Total: 8.86 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 3.90 Total: -17.55 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -7.15 Total: -105.54 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -65.95 -0.96 -66.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642847415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.852 kcal (2) G-P(sol) polarization free energy of solvation -65.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds