Wall clock time and date at job start Sun Mar 29 2020 21:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 14 14 C 1.46960 * 110.99744 * 58.80696 * 13 2 1 15 15 C 1.53050 * 109.36512 * 176.80976 * 14 13 2 16 16 N 1.46960 * 109.36484 * 58.39776 * 15 14 13 17 17 C 1.46895 * 110.99796 * 176.81211 * 16 15 14 18 18 C 1.46951 * 110.87860 * 300.68066 * 16 15 14 19 19 C 1.46947 * 111.00539 * 295.00479 * 13 2 1 20 20 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 22 22 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 23 23 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 24 24 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 25 25 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 26 26 H 1.09002 * 109.48599 * 296.77974 * 14 13 2 27 27 H 1.09000 * 109.49267 * 56.83572 * 14 13 2 28 28 H 1.08995 * 109.48592 * 298.42880 * 15 14 13 29 29 H 1.09001 * 109.50299 * 178.37643 * 15 14 13 30 30 H 1.08995 * 109.47032 * 183.80243 * 17 16 15 31 31 H 1.09004 * 109.47049 * 303.79865 * 17 16 15 32 32 H 1.08998 * 109.47400 * 63.80275 * 17 16 15 33 33 H 1.08998 * 109.49134 * 299.35228 * 18 16 15 34 34 H 1.09007 * 109.50341 * 179.29911 * 18 16 15 35 35 H 1.09006 * 109.48668 * 303.15646 * 19 13 2 36 36 H 1.08998 * 109.48895 * 63.21570 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 5.5412 -1.1009 -2.4128 9 14 3.3016 -2.1086 -3.6953 10 1 2.9409 -1.1637 -4.7826 11 1 4.1600 -3.1892 -4.2433 12 1 2.0654 -2.7002 -3.1233 13 7 2.0196 -0.6924 1.1995 14 6 1.5252 -2.0755 1.2479 15 6 2.1202 -2.7848 2.4667 16 7 1.7490 -2.0528 3.6858 17 6 2.2387 -2.7453 4.8852 18 6 2.2435 -0.6698 3.6373 19 6 1.6485 0.0394 2.4186 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 1.6054 -0.2617 -2.1370 24 1 1.7517 -1.7715 -1.2055 25 1 6.0256 -1.5077 -3.1483 26 1 0.4379 -2.0705 1.3249 27 1 1.8233 -2.6003 0.3403 28 1 3.2060 -2.8138 2.3763 29 1 1.7324 -3.8020 2.5210 30 1 1.8930 -2.2192 5.7750 31 1 1.8579 -3.7666 4.8960 32 1 3.3285 -2.7639 4.8745 33 1 3.3307 -0.6748 3.5603 34 1 1.9456 -0.1448 4.5450 35 1 2.0366 1.0566 2.3644 36 1 0.5627 0.0685 2.5089 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695817104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:11 Heat of formation + Delta-G solvation = 11.449612 kcal Electronic energy + Delta-G solvation = -15049.299623 eV Core-core repulsion = 12761.483189 eV Total energy + Delta-G solvation = -2287.816433 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.13945 -36.11569 -32.72458 -31.11778 -30.51268 -27.93227 -27.01370 -23.72842 -23.32948 -22.37027 -20.00663 -18.52544 -16.55832 -15.89693 -14.97852 -14.64928 -14.51671 -14.37992 -13.95314 -13.47119 -12.89575 -12.55760 -12.29253 -12.22173 -11.94752 -11.61288 -11.35260 -11.26794 -10.99162 -10.60822 -10.56398 -10.36430 -10.05370 -9.60754 -9.47841 -9.00883 -8.42435 -8.17655 -7.46615 -5.90895 -3.85031 3.35306 3.43272 3.45541 4.15317 4.52905 4.54273 5.21352 5.22967 5.42666 5.45092 5.53935 5.66379 5.69900 5.79462 5.81228 5.82118 5.88631 5.93674 5.96220 6.11749 6.25510 6.35569 6.42572 6.54898 6.60254 6.81432 7.11095 7.21009 7.23003 7.37987 7.82740 7.85637 7.98689 8.72629 9.22075 9.72091 11.23152 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035489 B = 0.009086 C = 0.008375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.794936 B = 3080.843856 C = 3342.602809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.096 3.904 3 H 0.075 0.925 4 C -0.009 4.009 5 C -0.491 4.491 6 H 0.078 0.922 7 C 0.061 3.939 8 N -0.908 5.908 9 Si 0.873 3.127 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.511 5.511 14 C 0.057 3.943 15 C 0.057 3.943 16 N -0.547 5.547 17 C 0.026 3.974 18 C 0.058 3.942 19 C 0.054 3.946 20 H 0.052 0.948 21 H 0.045 0.955 22 H 0.055 0.945 23 H 0.014 0.986 24 H 0.018 0.982 25 H 0.259 0.741 26 H 0.033 0.967 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.024 0.976 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.070 -1.365 10.609 14.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.012 4.012 3 H 0.093 0.907 4 C -0.046 4.046 5 C -0.529 4.529 6 H 0.096 0.904 7 C -0.138 4.138 8 N -0.548 5.548 9 Si 0.701 3.299 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.235 5.235 14 C -0.071 4.071 15 C -0.071 4.071 16 N -0.272 5.272 17 C -0.122 4.122 18 C -0.070 4.070 19 C -0.074 4.074 20 H 0.071 0.929 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.032 0.968 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.905 -1.420 10.500 13.840 hybrid contribution -0.349 -0.546 -0.782 1.015 sum -9.253 -1.966 9.718 13.562 Atomic orbital electron populations 1.22549 0.99665 1.01393 1.00966 1.21666 0.89939 0.98516 0.91055 0.90674 1.19722 0.97943 0.95347 0.91605 1.21066 0.89425 1.33828 1.08622 0.90359 1.25019 0.94674 0.96309 0.97824 1.69915 1.06431 1.46203 1.32277 0.86902 0.80192 0.80064 0.82786 1.20560 1.21621 1.19300 1.62227 1.58892 1.01345 1.01009 1.22156 0.96625 0.90482 0.97823 1.22200 0.99318 0.96587 0.89033 1.62204 1.59644 1.02724 1.02610 1.22314 0.97822 0.99117 0.92994 1.22147 0.98199 0.88808 0.97837 1.22134 0.97862 0.97386 0.90045 0.92908 0.93583 0.92602 0.96818 0.96421 0.93081 0.94914 0.89213 0.93591 0.91061 0.91823 0.91730 0.95700 0.93895 0.91145 0.90834 0.94722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.10 8.49 37.15 0.32 -2.79 16 2 C 0.10 1.92 2.30 -67.71 -0.16 1.77 16 3 H 0.08 1.55 8.11 -51.92 -0.42 1.13 16 4 C -0.01 -0.21 3.34 -27.88 -0.09 -0.30 16 5 C -0.49 -13.97 9.39 -34.44 -0.32 -14.30 16 6 H 0.08 2.45 7.99 -52.49 -0.42 2.03 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -28.41 13.96 55.43 0.77 -27.64 16 9 Si 0.87 21.92 27.47 -169.99 -4.67 17.25 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 13 N -0.51 -9.87 4.41 -226.49 -1.00 -10.87 16 14 C 0.06 1.04 4.82 -3.77 -0.02 1.02 16 15 C 0.06 0.91 5.62 -3.77 -0.02 0.89 16 16 N -0.55 -8.05 4.97 -242.76 -1.21 -9.26 16 17 C 0.03 0.31 9.60 60.06 0.58 0.89 16 18 C 0.06 0.86 5.62 -3.77 -0.02 0.84 16 19 C 0.05 0.88 5.25 -3.77 -0.02 0.86 16 20 H 0.05 0.87 6.45 -51.92 -0.34 0.54 16 21 H 0.05 0.69 6.59 -51.93 -0.34 0.35 16 22 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 24 H 0.02 0.42 5.17 -51.93 -0.27 0.16 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 26 H 0.03 0.57 6.46 -51.93 -0.34 0.23 16 27 H 0.09 1.80 6.07 -51.93 -0.32 1.48 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 35 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16 36 H 0.03 0.54 6.60 -51.93 -0.34 0.20 16 LS Contribution 274.03 15.07 4.13 4.13 Total: -1.00 -30.69 274.03 -7.97 -38.66 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -6.14 Total: -2.85 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 0.14 Total: -9.43 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -1.43 Total: -47.77 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.69 -7.97 -38.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695817104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.114 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds