Wall clock time and date at job start Sun Mar 29 2020 21:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 14 14 C 1.46960 * 110.99744 * 58.80696 * 13 2 1 15 15 C 1.53050 * 109.36512 * 176.80976 * 14 13 2 16 16 N 1.46960 * 109.36484 * 58.39776 * 15 14 13 17 17 C 1.46895 * 110.99796 * 176.81211 * 16 15 14 18 18 C 1.46951 * 110.87860 * 300.68066 * 16 15 14 19 19 C 1.46947 * 111.00539 * 295.00479 * 13 2 1 20 20 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 22 22 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 23 23 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 24 24 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 25 25 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 26 26 H 1.09002 * 109.48599 * 296.77974 * 14 13 2 27 27 H 1.09000 * 109.49267 * 56.83572 * 14 13 2 28 28 H 1.08995 * 109.48592 * 298.42880 * 15 14 13 29 29 H 1.09001 * 109.50299 * 178.37643 * 15 14 13 30 30 H 1.08995 * 109.47032 * 183.80243 * 17 16 15 31 31 H 1.09004 * 109.47049 * 303.79865 * 17 16 15 32 32 H 1.08998 * 109.47400 * 63.80275 * 17 16 15 33 33 H 1.08998 * 109.49134 * 299.35228 * 18 16 15 34 34 H 1.09007 * 109.50341 * 179.29911 * 18 16 15 35 35 H 1.09006 * 109.48668 * 303.15646 * 19 13 2 36 36 H 1.08998 * 109.48895 * 63.21570 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 5.5412 -1.1009 -2.4128 9 14 3.3016 -2.1086 -3.6953 10 1 2.9409 -1.1637 -4.7826 11 1 4.1600 -3.1892 -4.2433 12 1 2.0654 -2.7002 -3.1233 13 7 2.0196 -0.6924 1.1995 14 6 1.5252 -2.0755 1.2479 15 6 2.1202 -2.7848 2.4667 16 7 1.7490 -2.0528 3.6858 17 6 2.2387 -2.7453 4.8852 18 6 2.2435 -0.6698 3.6373 19 6 1.6485 0.0394 2.4186 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 1.6054 -0.2617 -2.1370 24 1 1.7517 -1.7715 -1.2055 25 1 6.0256 -1.5077 -3.1483 26 1 0.4379 -2.0705 1.3249 27 1 1.8233 -2.6003 0.3403 28 1 3.2060 -2.8138 2.3763 29 1 1.7324 -3.8020 2.5210 30 1 1.8930 -2.2192 5.7750 31 1 1.8579 -3.7666 4.8960 32 1 3.3285 -2.7639 4.8745 33 1 3.3307 -0.6748 3.5603 34 1 1.9456 -0.1448 4.5450 35 1 2.0366 1.0566 2.3644 36 1 0.5627 0.0685 2.5089 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695817104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:11 Heat of formation + Delta-G solvation = -11.223033 kcal Electronic energy + Delta-G solvation = -15050.282782 eV Core-core repulsion = 12761.483189 eV Total energy + Delta-G solvation = -2288.799593 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.49508 -37.49003 -34.78976 -32.74082 -31.82474 -29.74036 -28.23190 -25.15920 -24.73488 -24.00569 -21.50746 -19.98186 -18.77861 -17.27846 -16.49372 -16.04994 -15.92536 -15.67705 -15.53752 -14.88543 -14.63100 -14.16200 -13.95945 -13.42047 -13.36182 -13.20955 -12.69090 -12.56979 -12.46927 -12.27187 -12.09482 -11.79228 -11.66921 -11.44054 -11.32449 -11.00174 -10.67939 -9.36908 -8.88585 -8.18196 -6.17404 1.36698 1.38410 1.49439 2.41464 3.00339 3.08274 3.23145 3.97109 4.06083 4.16282 4.31726 4.38597 4.39840 4.45003 4.58747 4.63827 4.64247 4.71424 4.85224 4.93286 4.97202 5.00342 5.06265 5.07403 5.12284 5.25275 5.29740 5.57003 5.74788 6.01200 6.08163 6.37760 6.43127 6.54853 6.90792 7.43315 8.99395 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035489 B = 0.009086 C = 0.008375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.794936 B = 3080.843856 C = 3342.602809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 H 0.061 0.939 4 C -0.005 4.005 5 C -0.491 4.491 6 H 0.032 0.968 7 C -0.003 4.003 8 N -0.959 5.959 9 Si 0.944 3.056 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.248 1.248 13 N -0.541 5.541 14 C 0.061 3.939 15 C 0.061 3.939 16 N -0.547 5.547 17 C 0.025 3.975 18 C 0.061 3.939 19 C 0.056 3.944 20 H 0.055 0.945 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.020 0.980 24 H 0.021 0.979 25 H 0.261 0.739 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.018 0.982 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.643 -1.986 11.230 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.010 4.010 3 H 0.079 0.921 4 C -0.043 4.043 5 C -0.529 4.529 6 H 0.050 0.950 7 C -0.198 4.198 8 N -0.601 5.601 9 Si 0.769 3.231 10 H -0.194 1.194 11 H -0.216 1.216 12 H -0.171 1.171 13 N -0.266 5.266 14 C -0.067 4.067 15 C -0.067 4.067 16 N -0.272 5.272 17 C -0.122 4.122 18 C -0.068 4.068 19 C -0.072 4.072 20 H 0.074 0.926 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.038 0.962 24 H 0.039 0.961 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.500 -2.034 11.145 16.143 hybrid contribution 0.524 -0.299 -0.878 1.065 sum -10.977 -2.333 10.267 15.210 Atomic orbital electron populations 1.22388 0.96408 1.02049 1.02432 1.21481 0.92433 0.97126 0.89974 0.92105 1.19662 0.94551 0.96106 0.93969 1.21288 0.92025 1.32538 1.07076 0.94961 1.25963 0.95509 0.97572 1.00775 1.70089 1.08513 1.47985 1.33550 0.85748 0.79289 0.78685 0.79405 1.19417 1.21565 1.17131 1.62139 1.60214 1.02285 1.01954 1.22077 0.97359 0.89720 0.97552 1.22128 0.97508 0.97738 0.89328 1.62253 1.59492 1.02638 1.02826 1.22412 0.97524 0.99963 0.92350 1.22166 0.96791 0.89346 0.98451 1.22173 0.98647 0.97219 0.89128 0.92552 0.91691 0.91607 0.96167 0.96095 0.93055 0.93528 0.91850 0.96391 0.88906 0.89783 0.90344 0.96340 0.96115 0.88193 0.90823 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.31 8.49 71.98 0.61 -4.69 16 2 C 0.10 3.86 2.30 44.91 0.10 3.96 16 3 H 0.06 2.52 8.11 -2.38 -0.02 2.50 16 4 C -0.01 -0.26 3.34 29.85 0.10 -0.16 16 5 C -0.49 -28.73 9.39 25.60 0.24 -28.49 16 6 H 0.03 2.13 7.99 -2.91 -0.02 2.10 16 7 C 0.00 -0.20 5.47 84.66 0.46 0.26 16 8 N -0.96 -61.96 13.96 21.45 0.30 -61.66 16 9 Si 0.94 45.27 27.47 68.60 1.88 47.15 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 12 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 13 N -0.54 -20.77 4.41 -870.48 -3.84 -24.61 16 14 C 0.06 2.15 4.82 86.31 0.42 2.56 16 15 C 0.06 1.92 5.62 86.31 0.49 2.40 16 16 N -0.55 -14.95 4.97 -921.97 -4.58 -19.53 16 17 C 0.03 0.54 9.60 127.69 1.23 1.76 16 18 C 0.06 1.70 5.62 86.31 0.49 2.18 16 19 C 0.06 1.74 5.25 86.31 0.45 2.19 16 20 H 0.06 1.68 6.45 -2.38 -0.02 1.67 16 21 H 0.06 1.74 6.59 -2.39 -0.02 1.73 16 22 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 24 H 0.02 0.98 5.17 -2.39 -0.01 0.97 16 25 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 26 H 0.05 1.50 6.46 -2.39 -0.02 1.49 16 27 H 0.06 2.53 6.07 -2.39 -0.01 2.52 16 28 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 2.46 8.13 -2.39 -0.02 2.44 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.46 8.13 -2.38 -0.02 1.44 16 32 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.07 2.23 8.12 -2.38 -0.02 2.21 16 36 H 0.05 1.36 6.60 -2.39 -0.02 1.34 16 Total: -1.00 -67.53 274.03 -0.69 -68.21 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.97 Total: 8.45 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 4.58 Total: -18.01 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -8.12 Total: -105.80 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.88 Total: 47.15 kcal Total: -67.53 -0.69 -68.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695817104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.992 kcal (2) G-P(sol) polarization free energy of solvation -67.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds