Wall clock time and date at job start Sun Mar 29 2020 22:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99735 * 2 1 4 4 C 1.52995 * 109.47076 * 269.99743 * 3 2 1 5 5 C 1.53006 * 113.00028 * 309.66593 * 4 3 2 6 6 C 1.54033 * 113.92659 * 81.60100 * 4 3 2 7 7 O 1.44180 * 85.51695 * 136.81660 * 6 4 3 8 8 C 1.44179 * 93.34172 * 335.80744 * 7 6 4 9 9 C 1.34770 * 119.99905 * 179.97438 * 2 1 3 10 10 O 1.21693 * 119.99873 * 180.02562 * 9 2 1 11 11 C 1.46380 * 120.00478 * 0.02562 * 9 2 1 12 12 H 1.08006 * 119.99373 * 359.97438 * 11 9 2 13 13 C 1.40047 * 120.00255 * 179.97438 * 11 9 2 14 14 N 1.30669 * 119.99971 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00037 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47190 * 59.99903 * 15 13 11 17 17 H 1.48499 * 109.47445 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47147 * 300.00461 * 15 13 11 19 19 H 1.09004 * 109.46638 * 90.00333 * 1 2 3 20 20 H 1.09002 * 109.47293 * 209.99575 * 1 2 3 21 21 H 1.08994 * 109.47394 * 330.00510 * 1 2 3 22 22 H 1.09005 * 109.46482 * 149.99381 * 3 2 1 23 23 H 1.08994 * 109.47023 * 30.00114 * 3 2 1 24 24 H 1.08998 * 109.47216 * 297.84770 * 5 4 3 25 25 H 1.09002 * 109.46563 * 57.84001 * 5 4 3 26 26 H 1.08994 * 109.47220 * 177.84089 * 5 4 3 27 27 H 1.09003 * 113.86206 * 250.96180 * 6 4 3 28 28 H 1.08990 * 113.86508 * 22.67181 * 6 4 3 29 29 H 1.08993 * 113.86384 * 270.04716 * 8 7 6 30 30 H 1.08999 * 113.98278 * 138.35160 * 8 7 6 31 31 H 0.97004 * 119.99904 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.0673 0.6069 -2.3057 6 6 1.2534 2.4192 -2.1000 7 8 2.2285 3.3507 -2.6101 8 6 3.1740 3.0663 -1.5595 9 6 2.1388 -1.1672 0.0005 10 8 3.3558 -1.1671 0.0010 11 6 1.4070 -2.4349 0.0005 12 1 0.3270 -2.4348 0.0005 13 6 2.1073 -3.6477 0.0005 14 7 3.4140 -3.6477 0.0010 15 14 1.1734 -5.2655 -0.0002 16 1 0.3201 -5.3439 -1.2130 17 1 2.1383 -6.3942 0.0005 18 1 0.3190 -5.3444 1.2119 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5137 22 1 3.1499 1.1384 0.5140 23 1 1.6084 2.0283 0.5138 24 1 4.0403 0.3284 -1.9009 25 1 2.4109 -0.2633 -2.3047 26 1 3.1887 0.9692 -3.3265 27 1 0.7615 1.8284 -2.8728 28 1 0.5553 2.8578 -1.3872 29 1 3.0623 3.7025 -0.6816 30 1 4.2061 2.9886 -1.9014 31 1 3.8990 -4.4878 0.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702955812.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:18 Heat of formation + Delta-G solvation = -47.367632 kcal Electronic energy + Delta-G solvation = -14931.375550 eV Core-core repulsion = 12407.456854 eV Total energy + Delta-G solvation = -2523.918697 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.36505 -37.54099 -34.03579 -32.44666 -31.53576 -27.30218 -26.32906 -25.90810 -25.75817 -23.63942 -19.49390 -18.26208 -16.51061 -15.79835 -15.72366 -15.59528 -15.24365 -14.26241 -14.13708 -13.34564 -12.99448 -12.55256 -11.96489 -11.90011 -11.56330 -11.37513 -11.30205 -11.21115 -10.86309 -10.80611 -10.33253 -10.25038 -10.06019 -9.95700 -9.35057 -8.85606 -7.57866 -7.19029 -6.20556 -4.65915 3.13635 3.19203 3.20403 3.99993 4.07399 4.42544 4.55526 4.84821 5.21233 5.47342 5.50451 5.57130 5.75077 5.82710 5.98710 5.99999 6.24334 6.32803 6.37969 6.38634 6.52039 6.53137 6.61489 6.68624 7.09728 7.42921 7.61309 8.12476 8.33613 9.01026 9.41706 10.56638 10.75670 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052744 B = 0.008685 C = 0.008218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.737862 B = 3223.190416 C = 3406.526405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.646 5.646 3 C 0.135 3.865 4 C -0.133 4.133 5 C -0.112 4.112 6 C 0.043 3.957 7 O -0.387 6.387 8 C 0.040 3.960 9 C 0.558 3.442 10 O -0.573 6.573 11 C -0.545 4.545 12 H 0.070 0.930 13 C 0.088 3.912 14 N -0.766 5.766 15 Si 0.905 3.095 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.268 1.268 19 H 0.029 0.971 20 H 0.071 0.929 21 H 0.039 0.961 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.710 7.498 -1.279 8.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.384 5.384 3 C 0.010 3.990 4 C -0.135 4.135 5 C -0.170 4.170 6 C -0.034 4.034 7 O -0.306 6.306 8 C -0.037 4.037 9 C 0.364 3.636 10 O -0.455 6.455 11 C -0.582 4.582 12 H 0.088 0.912 13 C -0.132 4.132 14 N -0.395 5.395 15 Si 0.729 3.271 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.193 1.193 19 H 0.048 0.952 20 H 0.090 0.910 21 H 0.058 0.942 22 H 0.094 0.906 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.855 7.544 -1.492 8.602 hybrid contribution -0.662 -0.865 0.133 1.097 sum -4.517 6.680 -1.359 8.177 Atomic orbital electron populations 1.21397 0.82373 1.00968 0.99489 1.47945 1.04984 1.05249 1.80185 1.21054 0.97982 0.86733 0.93259 1.24026 0.94839 0.95766 0.98826 1.21418 1.02147 0.96845 0.96543 1.24060 0.92640 0.89287 0.97416 1.89582 1.29921 1.65425 1.45679 1.24033 0.94936 0.94380 0.90393 1.18167 0.87010 0.82129 0.76258 1.90594 1.13871 1.86191 1.54838 1.20983 0.93640 0.89356 1.54215 0.91153 1.25713 0.94601 1.00222 0.92642 1.70003 1.06990 1.27332 1.35189 0.86484 0.79891 0.81261 0.79432 1.19300 1.20579 1.19321 0.95228 0.91040 0.94245 0.90560 0.92772 0.91226 0.91181 0.93985 0.89661 0.90788 0.90624 0.89450 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.82 10.19 59.85 0.61 2.43 16 2 N -0.65 -14.04 2.52 -183.25 -0.46 -14.50 16 3 C 0.13 2.52 5.05 -4.04 -0.02 2.50 16 4 C -0.13 -2.30 1.21 -153.43 -0.19 -2.49 16 5 C -0.11 -2.25 7.76 37.16 0.29 -1.96 16 6 C 0.04 0.66 8.36 37.61 0.31 0.97 16 7 O -0.39 -6.48 12.37 -35.23 -0.44 -6.91 16 8 C 0.04 0.60 8.36 37.61 0.31 0.92 16 9 C 0.56 15.19 6.00 -12.99 -0.08 15.11 16 10 O -0.57 -17.50 13.22 5.20 0.07 -17.43 16 11 C -0.55 -14.90 8.74 -35.63 -0.31 -15.22 16 12 H 0.07 1.76 6.00 -52.48 -0.31 1.45 16 13 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 14 N -0.77 -22.44 11.83 55.55 0.66 -21.79 16 15 Si 0.90 19.81 29.56 -169.99 -5.02 14.79 16 16 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 20 H 0.07 1.33 6.09 -51.93 -0.32 1.01 16 21 H 0.04 0.58 7.89 -51.93 -0.41 0.17 16 22 H 0.08 1.59 7.42 -51.93 -0.39 1.21 16 23 H 0.05 0.85 7.74 -51.93 -0.40 0.45 16 24 H 0.07 1.54 7.60 -51.93 -0.39 1.14 16 25 H 0.07 1.61 6.60 -51.93 -0.34 1.26 16 26 H 0.04 0.76 8.09 -51.93 -0.42 0.34 16 27 H 0.09 1.30 8.10 -51.93 -0.42 0.88 16 28 H 0.07 1.00 7.99 -51.93 -0.42 0.59 16 29 H 0.08 0.98 8.10 -51.93 -0.42 0.55 16 30 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 LS Contribution 258.13 15.07 3.89 3.89 Total: -1.00 -32.17 258.13 -4.69 -36.85 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -4.22 Total: 0.53 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 0.84 Total: 4.58 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.20 Total: -36.29 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.37 Total: -24.35 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.17 -4.69 -36.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702955812.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.514 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds