Wall clock time and date at job start Sun Mar 29 2020 22:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99735 * 2 1 4 4 C 1.52995 * 109.47076 * 269.99743 * 3 2 1 5 5 C 1.53006 * 113.00028 * 309.66593 * 4 3 2 6 6 C 1.54033 * 113.92659 * 81.60100 * 4 3 2 7 7 O 1.44180 * 85.51695 * 136.81660 * 6 4 3 8 8 C 1.44179 * 93.34172 * 335.80744 * 7 6 4 9 9 C 1.34770 * 119.99905 * 179.97438 * 2 1 3 10 10 O 1.21693 * 119.99873 * 180.02562 * 9 2 1 11 11 C 1.46380 * 120.00478 * 0.02562 * 9 2 1 12 12 H 1.08006 * 119.99373 * 359.97438 * 11 9 2 13 13 C 1.40047 * 120.00255 * 179.97438 * 11 9 2 14 14 N 1.30669 * 119.99971 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00037 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47190 * 59.99903 * 15 13 11 17 17 H 1.48499 * 109.47445 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47147 * 300.00461 * 15 13 11 19 19 H 1.09004 * 109.46638 * 90.00333 * 1 2 3 20 20 H 1.09002 * 109.47293 * 209.99575 * 1 2 3 21 21 H 1.08994 * 109.47394 * 330.00510 * 1 2 3 22 22 H 1.09005 * 109.46482 * 149.99381 * 3 2 1 23 23 H 1.08994 * 109.47023 * 30.00114 * 3 2 1 24 24 H 1.08998 * 109.47216 * 297.84770 * 5 4 3 25 25 H 1.09002 * 109.46563 * 57.84001 * 5 4 3 26 26 H 1.08994 * 109.47220 * 177.84089 * 5 4 3 27 27 H 1.09003 * 113.86206 * 250.96180 * 6 4 3 28 28 H 1.08990 * 113.86508 * 22.67181 * 6 4 3 29 29 H 1.08993 * 113.86384 * 270.04716 * 8 7 6 30 30 H 1.08999 * 113.98278 * 138.35160 * 8 7 6 31 31 H 0.97004 * 119.99904 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.0673 0.6069 -2.3057 6 6 1.2534 2.4192 -2.1000 7 8 2.2285 3.3507 -2.6101 8 6 3.1740 3.0663 -1.5595 9 6 2.1388 -1.1672 0.0005 10 8 3.3558 -1.1671 0.0010 11 6 1.4070 -2.4349 0.0005 12 1 0.3270 -2.4348 0.0005 13 6 2.1073 -3.6477 0.0005 14 7 3.4140 -3.6477 0.0010 15 14 1.1734 -5.2655 -0.0002 16 1 0.3201 -5.3439 -1.2130 17 1 2.1383 -6.3942 0.0005 18 1 0.3190 -5.3444 1.2119 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5137 22 1 3.1499 1.1384 0.5140 23 1 1.6084 2.0283 0.5138 24 1 4.0403 0.3284 -1.9009 25 1 2.4109 -0.2633 -2.3047 26 1 3.1887 0.9692 -3.3265 27 1 0.7615 1.8284 -2.8728 28 1 0.5553 2.8578 -1.3872 29 1 3.0623 3.7025 -0.6816 30 1 4.2061 2.9886 -1.9014 31 1 3.8990 -4.4878 0.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702955812.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:17 Heat of formation + Delta-G solvation = -70.539795 kcal Electronic energy + Delta-G solvation = -14932.380371 eV Core-core repulsion = 12407.456854 eV Total energy + Delta-G solvation = -2524.923517 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.69290 -39.39512 -35.86906 -34.53173 -33.04472 -29.08922 -27.79934 -27.44932 -27.23688 -25.26304 -21.33233 -19.65980 -18.38189 -17.65059 -17.12917 -16.95251 -16.72849 -15.93376 -15.86620 -14.93336 -14.42486 -14.33287 -13.52457 -13.46026 -13.14162 -13.08367 -13.02127 -12.88286 -12.62855 -12.34163 -12.11181 -12.04758 -11.55782 -11.36425 -10.88175 -10.60669 -9.68267 -8.95216 -8.24229 -6.78543 1.39919 1.42594 1.53484 2.24952 2.51669 2.74510 2.90324 3.42595 3.65830 3.92064 4.09925 4.26547 4.39596 4.57368 4.61512 4.65373 4.77768 4.87835 4.97693 4.99473 5.03803 5.09739 5.18735 5.22623 5.39374 5.40833 5.83276 6.19307 6.48856 6.92874 7.49544 8.54751 8.73887 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052744 B = 0.008685 C = 0.008218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.737862 B = 3223.190416 C = 3406.526405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.647 5.647 3 C 0.135 3.865 4 C -0.144 4.144 5 C -0.099 4.099 6 C 0.055 3.945 7 O -0.402 6.402 8 C 0.050 3.950 9 C 0.545 3.455 10 O -0.620 6.620 11 C -0.572 4.572 12 H 0.089 0.911 13 C 0.030 3.970 14 N -0.821 5.821 15 Si 0.988 3.012 16 H -0.256 1.256 17 H -0.277 1.277 18 H -0.255 1.255 19 H 0.041 0.959 20 H 0.060 0.940 21 H 0.081 0.919 22 H 0.045 0.955 23 H 0.097 0.903 24 H 0.035 0.965 25 H 0.033 0.967 26 H 0.055 0.945 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.012 8.496 -1.140 11.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.383 5.383 3 C 0.011 3.989 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.022 4.022 7 O -0.321 6.321 8 C -0.027 4.027 9 C 0.351 3.649 10 O -0.507 6.507 11 C -0.609 4.609 12 H 0.107 0.893 13 C -0.185 4.185 14 N -0.450 5.450 15 Si 0.808 3.192 16 H -0.180 1.180 17 H -0.202 1.202 18 H -0.179 1.179 19 H 0.059 0.941 20 H 0.078 0.922 21 H 0.099 0.901 22 H 0.063 0.937 23 H 0.115 0.885 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.206 8.591 -1.353 10.684 hybrid contribution 0.052 -1.087 0.088 1.092 sum -6.154 7.504 -1.265 9.787 Atomic orbital electron populations 1.21584 0.79688 1.02500 1.00689 1.47782 1.06778 1.04915 1.78843 1.21218 0.97025 0.86297 0.94387 1.24018 0.97177 0.95980 0.97381 1.21204 0.99735 0.96801 0.97912 1.24136 0.92031 0.88438 0.97546 1.89577 1.30522 1.65531 1.46507 1.24137 0.94763 0.92683 0.91074 1.18440 0.86656 0.83971 0.75858 1.90552 1.15916 1.87422 1.56778 1.21520 0.94765 0.90180 1.54421 0.89316 1.26892 0.95438 1.04680 0.91442 1.70183 1.09322 1.28630 1.36906 0.85208 0.78336 0.75437 0.80194 1.18042 1.20234 1.17856 0.94070 0.92153 0.90088 0.93689 0.88521 0.94577 0.94745 0.92600 0.89742 0.87677 0.87521 0.89280 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.25 10.19 127.77 1.30 4.56 16 2 N -0.65 -27.72 2.52 -851.89 -2.15 -29.87 16 3 C 0.13 4.86 5.05 86.38 0.44 5.30 16 4 C -0.14 -4.79 1.21 -51.48 -0.06 -4.85 16 5 C -0.10 -4.09 7.76 71.98 0.56 -3.53 16 6 C 0.05 1.51 8.36 72.27 0.60 2.11 16 7 O -0.40 -12.24 12.37 -148.98 -1.84 -14.08 16 8 C 0.05 1.39 8.36 72.28 0.60 1.99 16 9 C 0.55 30.45 6.00 86.36 0.52 30.97 16 10 O -0.62 -39.84 13.22 -4.33 -0.06 -39.89 16 11 C -0.57 -31.69 8.74 24.83 0.22 -31.47 16 12 H 0.09 4.40 6.00 -2.91 -0.02 4.38 16 13 C 0.03 1.68 5.50 85.30 0.47 2.15 16 14 N -0.82 -49.86 11.83 21.83 0.26 -49.61 16 15 Si 0.99 40.77 29.56 68.60 2.03 42.80 16 16 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 17 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 18 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 19 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 20 H 0.06 2.13 6.09 -2.39 -0.01 2.11 16 21 H 0.08 2.01 7.89 -2.39 -0.02 1.99 16 22 H 0.04 1.90 7.42 -2.38 -0.02 1.88 16 23 H 0.10 2.65 7.74 -2.39 -0.02 2.64 16 24 H 0.04 1.68 7.60 -2.39 -0.02 1.66 16 25 H 0.03 1.63 6.60 -2.39 -0.02 1.61 16 26 H 0.06 2.06 8.09 -2.39 -0.02 2.04 16 27 H 0.08 2.35 8.10 -2.39 -0.02 2.33 16 28 H 0.11 2.29 7.99 -2.39 -0.02 2.27 16 29 H 0.11 2.32 8.10 -2.39 -0.02 2.30 16 30 H 0.09 2.41 8.10 -2.39 -0.02 2.39 16 31 H 0.27 15.10 8.29 -92.71 -0.77 14.33 16 Total: -1.00 -73.12 258.13 4.00 -69.12 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 1.12 Total: 14.29 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 4.65 Total: 7.24 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -1.89 Total: -79.47 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -1.90 Total: -53.97 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -73.12 4.00 -69.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702955812.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.424 kcal (2) G-P(sol) polarization free energy of solvation -73.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds