Wall clock time and date at job start Sun Mar 29 2020 22:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31460 * 1 3 3 Si 1.86801 * 119.99605 * 2 1 4 4 H 1.48503 * 109.47036 * 269.99698 * 3 2 1 5 5 H 1.48495 * 109.47366 * 29.99773 * 3 2 1 6 6 H 1.48508 * 109.47116 * 150.00242 * 3 2 1 7 7 C 1.38884 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00189 * 0.02562 * 7 2 1 9 9 N 1.37193 * 119.99956 * 179.97438 * 7 2 1 10 10 C 1.34781 * 119.99771 * 180.02562 * 9 7 2 11 11 O 1.21502 * 120.00288 * 0.02562 * 10 9 7 12 12 O 1.34667 * 119.99859 * 180.02562 * 10 9 7 13 13 C 1.45200 * 116.99895 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46978 * 89.99954 * 13 12 10 15 15 C 1.52999 * 109.47317 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.47159 * 300.00546 * 15 14 13 17 17 C 1.52997 * 109.47452 * 59.99536 * 16 15 14 18 18 C 1.53000 * 109.47046 * 209.99743 * 13 12 10 19 19 H 0.96998 * 120.00452 * 0.02562 * 1 2 3 20 20 H 0.96998 * 120.00304 * 0.02562 * 9 7 2 21 21 H 1.09002 * 109.47097 * 330.00019 * 13 12 10 22 22 H 1.08996 * 109.47853 * 300.00072 * 14 13 12 23 23 H 1.09002 * 109.47153 * 60.00100 * 14 13 12 24 24 H 1.09000 * 109.47486 * 180.02562 * 15 14 13 25 25 H 1.09002 * 109.46716 * 60.00091 * 15 14 13 26 26 H 1.09002 * 109.46935 * 299.99411 * 16 15 14 27 27 H 1.09001 * 109.46812 * 179.97438 * 16 15 14 28 28 H 1.08993 * 109.47194 * 179.97438 * 17 16 15 29 29 H 1.09002 * 109.46695 * 59.99734 * 17 16 15 30 30 H 1.08992 * 109.47399 * 300.00084 * 18 13 12 31 31 H 1.09004 * 109.46724 * 60.00570 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 2.4960 2.0465 -1.4001 5 1 1.4459 2.6527 0.7000 6 1 3.5462 1.4403 0.7000 7 6 2.0091 -1.2027 0.0005 8 1 1.4692 -2.1381 0.0005 9 7 3.3810 -1.2026 0.0000 10 6 4.0550 -2.3698 0.0000 11 8 3.4475 -3.4221 0.0000 12 8 5.4016 -2.3698 0.0000 13 6 6.0609 -3.6635 0.0006 14 6 6.2924 -4.1185 -1.4417 15 6 6.9876 -5.4814 -1.4412 16 6 8.3323 -5.3677 -0.7201 17 6 8.1008 -4.9127 0.7222 18 6 7.4055 -3.5503 0.7217 19 1 -0.4851 0.8400 -0.0004 20 1 3.8660 -0.3626 -0.0004 21 1 5.4329 -4.3910 0.5147 22 1 5.3346 -4.1991 -1.9556 23 1 6.9204 -3.3909 -1.9559 24 1 7.1530 -5.8054 -2.4687 25 1 6.3600 -6.2092 -0.9269 26 1 8.9600 -4.6400 -1.2343 27 1 8.8274 -6.3388 -0.7193 28 1 9.0586 -4.8322 1.2360 29 1 7.4731 -5.6405 1.2364 30 1 8.0335 -2.8228 0.2076 31 1 7.2405 -3.2262 1.7493 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704322431.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:37 Heat of formation + Delta-G solvation = -104.209661 kcal Electronic energy + Delta-G solvation = -14375.595938 eV Core-core repulsion = 11849.212386 eV Total energy + Delta-G solvation = -2526.383552 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.65446 -37.83606 -35.40263 -33.94898 -31.69939 -30.75466 -29.72883 -25.09372 -22.61958 -22.32338 -20.08373 -19.75843 -18.87872 -16.82282 -16.19257 -15.27034 -15.00533 -14.49863 -14.11924 -13.97092 -13.22827 -12.89641 -12.73770 -12.37844 -12.17922 -12.13022 -11.31073 -11.12551 -11.00309 -10.69141 -10.62586 -10.52576 -10.20486 -10.01367 -9.75566 -9.52498 -9.22298 -8.25524 -6.30148 -3.86025 3.08543 3.11729 3.16157 3.32202 3.93846 4.12863 4.73346 4.77326 4.89571 5.18103 5.22378 5.28793 5.41764 5.50589 5.52548 5.61761 5.65868 5.85659 6.00053 6.09573 6.13452 6.15502 6.23839 6.41072 6.46394 7.16600 7.59666 8.13617 8.55004 8.88387 9.37422 9.84995 10.82285 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061893 B = 0.006845 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.286277 B = 4089.541777 C = 4286.680152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.301 4.301 8 H 0.122 0.878 9 N -0.570 5.570 10 C 0.595 3.405 11 O -0.598 6.598 12 O -0.383 6.383 13 C 0.112 3.888 14 C -0.136 4.136 15 C -0.115 4.115 16 C -0.122 4.122 17 C -0.115 4.115 18 C -0.116 4.116 19 H 0.275 0.725 20 H 0.379 0.621 21 H 0.083 0.917 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.206 -5.350 -0.626 17.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.158 4.158 3 Si 0.705 3.295 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.429 4.429 8 H 0.140 0.860 9 N -0.216 5.216 10 C 0.347 3.653 11 O -0.491 6.491 12 O -0.299 6.299 13 C 0.056 3.944 14 C -0.174 4.174 15 C -0.153 4.153 16 C -0.159 4.159 17 C -0.153 4.153 18 C -0.154 4.154 19 H 0.085 0.915 20 H 0.212 0.788 21 H 0.101 0.899 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.759 -5.755 -0.625 16.789 hybrid contribution 0.425 1.300 -0.022 1.368 sum 16.184 -4.455 -0.647 16.799 Atomic orbital electron populations 1.69617 1.05436 1.27583 1.49587 1.24896 0.95477 0.97849 0.97537 0.86673 0.79897 0.83887 0.79071 1.19487 1.20041 1.19280 1.19300 0.77304 0.96983 1.49276 0.86019 1.40880 1.06766 1.03941 1.70054 1.17810 0.79888 0.85350 0.82225 1.90819 1.68066 1.30678 1.59501 1.86184 1.20705 1.34583 1.88427 1.22361 0.92324 0.83401 0.96322 1.21944 1.01611 0.96979 0.96858 1.21485 0.96192 0.97047 1.00569 1.21592 0.97424 1.01082 0.95826 1.21486 1.00326 0.96432 0.97015 1.21598 0.94958 0.97876 1.00962 0.91487 0.78784 0.89891 0.90947 0.91503 0.91705 0.91640 0.91882 0.91981 0.91454 0.91641 0.91132 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.94 13.96 55.49 0.77 -25.16 16 2 C 0.05 1.26 5.50 -17.47 -0.10 1.17 16 3 Si 0.88 19.90 27.74 -169.99 -4.71 15.19 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.67 6.52 56.52 0.37 -5.30 16 7 C -0.30 -8.74 10.16 -14.91 -0.15 -8.89 16 8 H 0.12 3.96 7.39 -52.49 -0.39 3.57 16 9 N -0.57 -14.62 5.10 -15.38 -0.08 -14.70 16 10 C 0.60 14.91 8.68 54.06 0.47 15.38 16 11 O -0.60 -16.66 15.18 -19.27 -0.29 -16.95 16 12 O -0.38 -8.00 9.93 -40.40 -0.40 -8.40 16 13 C 0.11 1.90 2.46 -26.73 -0.07 1.83 16 14 C -0.14 -2.04 5.56 -26.73 -0.15 -2.19 16 15 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 16 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 17 C -0.11 -1.18 5.92 -26.76 -0.16 -1.34 16 18 C -0.12 -1.51 5.58 -26.75 -0.15 -1.66 16 19 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 20 H 0.38 8.76 5.87 -40.82 -0.24 8.53 16 21 H 0.08 1.55 7.16 -51.93 -0.37 1.17 16 22 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 258.49 15.07 3.90 3.90 Total: -1.00 -31.58 258.49 -5.83 -37.41 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -4.39 Total: 7.28 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -0.62 Total: 1.45 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.70 Total: -39.86 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.69 Total: -25.35 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.71 Total: 15.19 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.58 -5.83 -37.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704322431.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.801 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds