Wall clock time and date at job start Sun Mar 29 2020 22:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31460 * 1 3 3 Si 1.86801 * 119.99605 * 2 1 4 4 H 1.48503 * 109.47036 * 269.99698 * 3 2 1 5 5 H 1.48495 * 109.47366 * 29.99773 * 3 2 1 6 6 H 1.48508 * 109.47116 * 150.00242 * 3 2 1 7 7 C 1.38884 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00189 * 0.02562 * 7 2 1 9 9 N 1.37193 * 119.99956 * 179.97438 * 7 2 1 10 10 C 1.34781 * 119.99771 * 180.02562 * 9 7 2 11 11 O 1.21502 * 120.00288 * 0.02562 * 10 9 7 12 12 O 1.34667 * 119.99859 * 180.02562 * 10 9 7 13 13 C 1.45200 * 116.99895 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46978 * 89.99954 * 13 12 10 15 15 C 1.52999 * 109.47317 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.47159 * 300.00546 * 15 14 13 17 17 C 1.52997 * 109.47452 * 59.99536 * 16 15 14 18 18 C 1.53000 * 109.47046 * 209.99743 * 13 12 10 19 19 H 0.96998 * 120.00452 * 0.02562 * 1 2 3 20 20 H 0.96998 * 120.00304 * 0.02562 * 9 7 2 21 21 H 1.09002 * 109.47097 * 330.00019 * 13 12 10 22 22 H 1.08996 * 109.47853 * 300.00072 * 14 13 12 23 23 H 1.09002 * 109.47153 * 60.00100 * 14 13 12 24 24 H 1.09000 * 109.47486 * 180.02562 * 15 14 13 25 25 H 1.09002 * 109.46716 * 60.00091 * 15 14 13 26 26 H 1.09002 * 109.46935 * 299.99411 * 16 15 14 27 27 H 1.09001 * 109.46812 * 179.97438 * 16 15 14 28 28 H 1.08993 * 109.47194 * 179.97438 * 17 16 15 29 29 H 1.09002 * 109.46695 * 59.99734 * 17 16 15 30 30 H 1.08992 * 109.47399 * 300.00084 * 18 13 12 31 31 H 1.09004 * 109.46724 * 60.00570 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 2.4960 2.0465 -1.4001 5 1 1.4459 2.6527 0.7000 6 1 3.5462 1.4403 0.7000 7 6 2.0091 -1.2027 0.0005 8 1 1.4692 -2.1381 0.0005 9 7 3.3810 -1.2026 0.0000 10 6 4.0550 -2.3698 0.0000 11 8 3.4475 -3.4221 0.0000 12 8 5.4016 -2.3698 0.0000 13 6 6.0609 -3.6635 0.0006 14 6 6.2924 -4.1185 -1.4417 15 6 6.9876 -5.4814 -1.4412 16 6 8.3323 -5.3677 -0.7201 17 6 8.1008 -4.9127 0.7222 18 6 7.4055 -3.5503 0.7217 19 1 -0.4851 0.8400 -0.0004 20 1 3.8660 -0.3626 -0.0004 21 1 5.4329 -4.3910 0.5147 22 1 5.3346 -4.1991 -1.9556 23 1 6.9204 -3.3909 -1.9559 24 1 7.1530 -5.8054 -2.4687 25 1 6.3600 -6.2092 -0.9269 26 1 8.9600 -4.6400 -1.2343 27 1 8.8274 -6.3388 -0.7193 28 1 9.0586 -4.8322 1.2360 29 1 7.4731 -5.6405 1.2364 30 1 8.0335 -2.8228 0.2076 31 1 7.2405 -3.2262 1.7493 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704322431.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:36 Heat of formation + Delta-G solvation = -126.009093 kcal Electronic energy + Delta-G solvation = -14376.541232 eV Core-core repulsion = 11849.212386 eV Total energy + Delta-G solvation = -2527.328847 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.40961 -39.22517 -37.07136 -36.06426 -33.86010 -31.76178 -30.91148 -27.18464 -23.80873 -23.49141 -21.90851 -20.98964 -20.79145 -18.81242 -17.84399 -16.98715 -16.70846 -16.03770 -15.16579 -15.09527 -15.05283 -14.42080 -14.40263 -13.82495 -13.76861 -13.19354 -13.06005 -12.48124 -12.32286 -12.08398 -12.06306 -11.87644 -11.67236 -11.58337 -11.35118 -11.29390 -10.84064 -10.40399 -8.46287 -6.12184 1.29572 1.33868 1.40652 1.58668 1.93662 2.19530 3.08001 3.57214 3.72882 3.73849 4.01079 4.23614 4.24820 4.32630 4.49573 4.52356 4.66803 4.90199 4.91654 5.07365 5.18123 5.19834 5.28427 5.34230 5.38054 5.48234 5.59134 5.92353 6.45067 6.70004 7.20574 7.83178 8.70047 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061893 B = 0.006845 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.286277 B = 4089.541777 C = 4286.680152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.003 4.003 3 Si 0.961 3.039 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.241 1.241 7 C -0.327 4.327 8 H 0.066 0.934 9 N -0.567 5.567 10 C 0.599 3.401 11 O -0.635 6.635 12 O -0.375 6.375 13 C 0.098 3.902 14 C -0.134 4.134 15 C -0.112 4.112 16 C -0.117 4.117 17 C -0.112 4.112 18 C -0.109 4.109 19 H 0.283 0.717 20 H 0.394 0.606 21 H 0.057 0.943 22 H 0.037 0.963 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.388 -4.109 -0.650 19.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.780 3.220 4 H -0.179 1.179 5 H -0.190 1.190 6 H -0.165 1.165 7 C -0.455 4.455 8 H 0.084 0.916 9 N -0.216 5.216 10 C 0.352 3.648 11 O -0.530 6.530 12 O -0.290 6.290 13 C 0.043 3.957 14 C -0.172 4.172 15 C -0.150 4.150 16 C -0.154 4.154 17 C -0.149 4.149 18 C -0.147 4.147 19 H 0.093 0.907 20 H 0.230 0.770 21 H 0.076 0.924 22 H 0.056 0.944 23 H 0.099 0.901 24 H 0.100 0.900 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.976 -4.531 -0.647 19.520 hybrid contribution -0.605 0.794 -0.022 0.999 sum 18.371 -3.737 -0.670 18.759 Atomic orbital electron populations 1.69767 1.07676 1.29556 1.49545 1.25895 0.96432 1.02232 0.95681 0.85424 0.79254 0.77117 0.80168 1.17900 1.19035 1.16493 1.18895 0.78852 0.95756 1.51987 0.91597 1.40614 1.05691 1.04832 1.70431 1.17945 0.81160 0.84653 0.81036 1.90791 1.69414 1.32082 1.60709 1.86197 1.17904 1.37023 1.87834 1.22904 0.93506 0.81179 0.98138 1.21948 1.00562 0.99569 0.95115 1.21505 0.97044 0.94434 1.02013 1.21597 0.96089 1.02771 0.94981 1.21530 1.01148 0.94385 0.97881 1.21655 0.92514 1.00221 1.00317 0.90673 0.76992 0.92438 0.94442 0.90133 0.90039 0.92564 0.90680 0.89657 0.88617 0.92114 0.89755 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.52 13.96 21.65 0.30 -55.22 16 2 C 0.00 -0.15 5.50 84.90 0.47 0.32 16 3 Si 0.96 39.94 27.74 68.60 1.90 41.85 16 4 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 6 H -0.24 -8.95 6.52 99.48 0.65 -8.30 16 7 C -0.33 -19.71 10.16 84.01 0.85 -18.86 16 8 H 0.07 4.62 7.39 -2.91 -0.02 4.59 16 9 N -0.57 -29.43 5.10 -432.96 -2.21 -31.63 16 10 C 0.60 30.84 8.68 129.79 1.13 31.97 16 11 O -0.63 -37.28 15.18 19.83 0.30 -36.98 16 12 O -0.37 -15.60 9.93 -55.76 -0.55 -16.16 16 13 C 0.10 3.31 2.46 30.59 0.08 3.38 16 14 C -0.13 -3.97 5.56 30.59 0.17 -3.80 16 15 C -0.11 -2.43 5.92 30.60 0.18 -2.25 16 16 C -0.12 -1.87 5.92 30.60 0.18 -1.69 16 17 C -0.11 -1.95 5.92 30.58 0.18 -1.77 16 18 C -0.11 -2.60 5.58 30.58 0.17 -2.43 16 19 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 20 H 0.39 17.67 5.87 -92.71 -0.54 17.12 16 21 H 0.06 2.23 7.16 -2.39 -0.02 2.21 16 22 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -71.93 258.49 3.67 -68.26 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.51 Total: 25.01 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 3.41 Total: 4.87 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -1.90 Total: -86.85 kcal Atomic # 8 Polarization: -52.89 SS G_CDS: -0.25 Total: -53.14 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 1.90 Total: 41.85 kcal Total: -71.93 3.67 -68.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704322431.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.745 kcal (2) G-P(sol) polarization free energy of solvation -71.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds