Wall clock time and date at job start Sun Mar 29 2020 21:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00019 * 2 1 4 4 H 1.48499 * 109.46942 * 239.99866 * 3 2 1 5 5 H 1.48499 * 109.47417 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47242 * 120.00528 * 3 2 1 7 7 C 1.37879 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99855 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00296 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47447 * 179.97438 * 9 7 2 11 11 C 1.39359 * 119.46088 * 89.99945 * 10 9 7 12 12 C 1.36145 * 120.86123 * 179.97438 * 11 10 9 13 13 C 1.40419 * 119.61595 * 359.97438 * 12 11 10 14 14 C 1.40771 * 121.37418 * 180.02562 * 13 12 11 15 15 C 1.36580 * 118.15235 * 179.97438 * 14 13 12 16 16 C 1.39335 * 119.93197 * 359.97438 * 15 14 13 17 17 N 1.31078 * 121.74987 * 0.02562 * 16 15 14 18 18 C 1.33682 * 121.32457 * 359.97438 * 17 16 15 19 19 C 1.36070 * 119.46880 * 269.99985 * 10 9 7 20 20 H 0.97003 * 119.99960 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47168 * 59.99827 * 9 7 2 22 22 H 1.08999 * 109.47123 * 299.99823 * 9 7 2 23 23 H 1.08001 * 119.56966 * 0.25728 * 11 10 9 24 24 H 1.08001 * 120.19105 * 179.97438 * 12 11 10 25 25 H 1.08003 * 120.92205 * 359.94927 * 14 13 12 26 26 H 1.07993 * 120.02931 * 180.02562 * 15 14 13 27 27 H 1.08000 * 119.12074 * 179.97438 * 16 15 14 28 28 H 1.08005 * 120.12518 * 359.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6756 -4.1656 1.2139 12 6 3.5596 -5.2005 1.2472 13 6 4.0290 -5.7512 0.0438 14 6 4.9428 -6.8219 0.0350 15 6 5.3555 -7.3070 -1.1732 16 6 4.8712 -6.7422 -2.3513 17 7 4.0203 -5.7452 -2.3393 18 6 3.5767 -5.2239 -1.1911 19 6 2.6652 -4.1535 -1.1841 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.3113 -3.7459 2.1400 24 1 3.8979 -5.5956 2.1937 25 1 5.3078 -7.2476 0.9580 26 1 6.0557 -8.1281 -1.2153 27 1 5.2066 -7.1357 -3.2995 28 1 2.3097 -3.7382 -2.1156 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705916075.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:05 Heat of formation + Delta-G solvation = 38.720992 kcal Electronic energy + Delta-G solvation = -12869.265930 eV Core-core repulsion = 10656.389235 eV Total energy + Delta-G solvation = -2212.876694 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.085 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.35765 -36.98672 -33.54242 -32.83552 -30.89542 -29.63606 -27.29992 -24.05445 -23.41195 -21.79415 -21.19426 -17.37388 -16.58411 -16.41666 -16.21457 -14.58743 -14.05821 -13.96848 -13.88446 -13.56221 -12.77543 -12.48597 -12.31133 -11.50605 -11.36698 -11.01208 -10.97970 -10.61824 -10.51677 -10.21281 -9.66848 -9.45045 -9.13738 -8.45865 -8.13048 -7.66839 -6.08114 -4.12543 0.81954 1.26138 2.45445 3.30809 3.34691 3.36471 3.44574 4.39560 4.61133 4.65819 4.87762 5.07030 5.14644 5.26761 5.34848 5.52622 5.73766 5.89321 5.99436 6.18721 6.29871 6.54566 6.58010 6.90140 6.92590 7.04494 7.38377 7.52067 7.72451 7.86997 8.24712 8.28081 8.91937 9.51579 11.01740 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.049304 B = 0.006935 C = 0.006715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.763813 B = 4036.270418 C = 4168.667896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.046 3.954 10 C -0.017 4.017 11 C -0.095 4.095 12 C -0.115 4.115 13 C -0.117 4.117 14 C -0.057 4.057 15 C -0.196 4.196 16 C 0.117 3.883 17 N -0.475 5.475 18 C 0.132 3.868 19 C -0.112 4.112 20 H 0.264 0.736 21 H 0.033 0.967 22 H 0.033 0.967 23 H 0.126 0.874 24 H 0.122 0.878 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.151 0.849 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.140 -12.202 0.742 14.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.009 3.991 10 C -0.018 4.018 11 C -0.113 4.113 12 C -0.134 4.134 13 C -0.119 4.119 14 C -0.083 4.083 15 C -0.216 4.216 16 C -0.056 4.056 17 N -0.183 5.183 18 C 0.012 3.988 19 C -0.130 4.130 20 H 0.073 0.927 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.144 0.856 24 H 0.140 0.860 25 H 0.148 0.852 26 H 0.146 0.854 27 H 0.168 0.832 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.597 -11.636 -0.005 13.897 hybrid contribution 0.863 0.537 0.798 1.292 sum 8.460 -11.100 0.793 13.978 Atomic orbital electron populations 1.69940 1.06041 1.27067 1.50094 1.24998 0.94898 0.99283 0.95004 0.86571 0.79532 0.82663 0.78790 1.20091 1.21173 1.20138 1.20986 0.93024 0.89721 1.51598 0.92464 1.18446 0.92482 0.89369 0.98823 1.20508 0.95309 0.94567 0.91464 1.21053 0.96373 0.95116 0.98763 1.20881 0.98673 0.97654 0.96202 1.18771 0.99944 0.98342 0.94846 1.21379 0.94429 0.94084 0.98374 1.21704 1.03401 1.02773 0.93680 1.22812 0.92835 0.92005 0.97971 1.68013 1.10871 1.10154 1.29266 1.18968 0.96386 0.95855 0.87619 1.20682 0.97742 0.95349 0.99245 0.92682 0.94884 0.94927 0.85557 0.85996 0.85154 0.85359 0.83179 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.39 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 15 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 15 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.52 -14.31 9.09 -34.44 -0.31 -14.63 15 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 15 9 C 0.05 1.16 5.07 -29.04 -0.15 1.01 15 10 C -0.02 -0.36 5.03 -104.98 -0.53 -0.89 15 11 C -0.10 -1.78 9.59 -39.92 -0.38 -2.17 15 12 C -0.12 -1.87 9.77 -39.51 -0.39 -2.26 15 13 C -0.12 -1.99 5.74 -106.80 -0.61 -2.60 15 14 C -0.06 -0.76 9.90 -39.22 -0.39 -1.15 15 15 C -0.20 -2.39 10.03 -39.77 -0.40 -2.79 15 16 C 0.12 1.64 11.15 -17.47 -0.19 1.45 15 17 N -0.48 -8.63 10.34 -10.98 -0.11 -8.75 15 18 C 0.13 2.56 6.60 -84.86 -0.56 2.00 15 19 C -0.11 -2.36 9.58 -39.47 -0.38 -2.73 15 20 H 0.26 7.29 8.31 -40.82 -0.34 6.96 15 21 H 0.03 0.88 8.07 -51.93 -0.42 0.46 15 22 H 0.03 0.85 8.08 -51.93 -0.42 0.43 15 23 H 0.13 2.21 8.06 -52.49 -0.42 1.79 15 24 H 0.12 1.55 8.06 -52.49 -0.42 1.13 15 25 H 0.13 1.32 8.06 -52.48 -0.42 0.90 15 26 H 0.13 1.10 8.06 -52.49 -0.42 0.68 15 27 H 0.15 1.56 8.06 -52.49 -0.42 1.14 15 28 H 0.13 2.82 8.06 -52.48 -0.42 2.40 15 LS Contribution 252.04 15.07 3.80 3.80 Total: -1.00 -30.66 252.04 -7.90 -38.57 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -2.92 Total: -1.51 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -4.39 Total: -23.17 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.62 Total: -34.13 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.66 -7.90 -38.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705916075.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.289 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds