Wall clock time and date at job start Sun Mar 29 2020 21:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00019 * 2 1 4 4 H 1.48499 * 109.46942 * 239.99866 * 3 2 1 5 5 H 1.48499 * 109.47417 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47242 * 120.00528 * 3 2 1 7 7 C 1.37879 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99855 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00296 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47447 * 179.97438 * 9 7 2 11 11 C 1.39359 * 119.46088 * 89.99945 * 10 9 7 12 12 C 1.36145 * 120.86123 * 179.97438 * 11 10 9 13 13 C 1.40419 * 119.61595 * 359.97438 * 12 11 10 14 14 C 1.40771 * 121.37418 * 180.02562 * 13 12 11 15 15 C 1.36580 * 118.15235 * 179.97438 * 14 13 12 16 16 C 1.39335 * 119.93197 * 359.97438 * 15 14 13 17 17 N 1.31078 * 121.74987 * 0.02562 * 16 15 14 18 18 C 1.33682 * 121.32457 * 359.97438 * 17 16 15 19 19 C 1.36070 * 119.46880 * 269.99985 * 10 9 7 20 20 H 0.97003 * 119.99960 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47168 * 59.99827 * 9 7 2 22 22 H 1.08999 * 109.47123 * 299.99823 * 9 7 2 23 23 H 1.08001 * 119.56966 * 0.25728 * 11 10 9 24 24 H 1.08001 * 120.19105 * 179.97438 * 12 11 10 25 25 H 1.08003 * 120.92205 * 359.94927 * 14 13 12 26 26 H 1.07993 * 120.02931 * 180.02562 * 15 14 13 27 27 H 1.08000 * 119.12074 * 179.97438 * 16 15 14 28 28 H 1.08005 * 120.12518 * 359.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6756 -4.1656 1.2139 12 6 3.5596 -5.2005 1.2472 13 6 4.0290 -5.7512 0.0438 14 6 4.9428 -6.8219 0.0350 15 6 5.3555 -7.3070 -1.1732 16 6 4.8712 -6.7422 -2.3513 17 7 4.0203 -5.7452 -2.3393 18 6 3.5767 -5.2239 -1.1911 19 6 2.6652 -4.1535 -1.1841 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.3113 -3.7459 2.1400 24 1 3.8979 -5.5956 2.1937 25 1 5.3078 -7.2476 0.9580 26 1 6.0557 -8.1281 -1.2153 27 1 5.2066 -7.1357 -3.2995 28 1 2.3097 -3.7382 -2.1156 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705916075.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:05 Heat of formation + Delta-G solvation = 20.337129 kcal Electronic energy + Delta-G solvation = -12870.063114 eV Core-core repulsion = 10656.389235 eV Total energy + Delta-G solvation = -2213.673878 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.085 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.62998 -38.39259 -35.34592 -34.31575 -32.49191 -30.96780 -29.07596 -25.77255 -24.75904 -23.18434 -22.71368 -18.71336 -18.52755 -17.77825 -17.59925 -16.52421 -15.35329 -15.28706 -15.17843 -14.96982 -14.42864 -13.93981 -13.79869 -13.32900 -13.09759 -12.64459 -12.50854 -12.40672 -12.23106 -11.66811 -11.54568 -11.21952 -10.63395 -10.34192 -9.50969 -9.08858 -8.23385 -6.37248 -0.40809 -0.01724 1.15518 1.38076 1.41221 1.49464 2.10941 2.40016 3.07393 3.25779 3.46562 3.74113 3.96357 4.06610 4.14062 4.31974 4.41668 4.61270 4.68581 4.95788 5.04909 5.16767 5.20907 5.28819 5.33583 5.49490 5.69644 5.71033 5.94599 6.01240 6.14761 6.74021 7.08026 7.31246 8.85969 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.049304 B = 0.006935 C = 0.006715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.763813 B = 4036.270418 C = 4168.667896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.055 3.945 10 C -0.038 4.038 11 C -0.124 4.124 12 C -0.086 4.086 13 C -0.134 4.134 14 C -0.050 4.050 15 C -0.180 4.180 16 C 0.122 3.878 17 N -0.522 5.522 18 C 0.110 3.890 19 C -0.135 4.135 20 H 0.267 0.733 21 H 0.001 0.999 22 H 0.015 0.985 23 H 0.131 0.869 24 H 0.169 0.831 25 H 0.176 0.824 26 H 0.179 0.821 27 H 0.187 0.813 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.335 -14.370 1.653 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.570 4.570 8 H 0.071 0.929 9 C 0.018 3.982 10 C -0.040 4.040 11 C -0.142 4.142 12 C -0.104 4.104 13 C -0.136 4.136 14 C -0.076 4.076 15 C -0.199 4.199 16 C -0.051 4.051 17 N -0.231 5.231 18 C -0.010 4.010 19 C -0.154 4.154 20 H 0.076 0.924 21 H 0.019 0.981 22 H 0.033 0.967 23 H 0.149 0.851 24 H 0.187 0.813 25 H 0.193 0.807 26 H 0.197 0.803 27 H 0.204 0.796 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.794 -13.813 0.911 17.554 hybrid contribution -0.007 0.972 0.406 1.053 sum 10.787 -12.841 1.317 16.822 Atomic orbital electron populations 1.70065 1.07643 1.28164 1.50893 1.25922 0.95804 1.03108 0.94374 0.85476 0.78317 0.77980 0.79157 1.19693 1.20292 1.18877 1.21293 0.92993 0.91157 1.51588 0.92909 1.18177 0.92847 0.90948 0.96269 1.20174 0.95946 0.94463 0.93367 1.21044 0.98541 0.97128 0.97443 1.21311 0.95866 0.95267 0.97976 1.19122 1.00943 0.99673 0.93837 1.21892 0.92582 0.92226 1.00907 1.22258 1.02589 1.02829 0.92250 1.23638 0.90606 0.90070 1.00760 1.67992 1.13293 1.12552 1.29237 1.18950 0.96663 0.95822 0.89528 1.20531 0.99649 0.97231 0.97950 0.92412 0.98092 0.96719 0.85096 0.81333 0.80685 0.80340 0.79638 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.57 13.29 21.45 0.28 -56.29 15 2 C 0.01 0.38 5.46 84.66 0.46 0.84 15 3 Si 0.97 44.95 29.54 68.60 2.03 46.98 15 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 6 H -0.26 -11.71 7.11 99.48 0.71 -11.00 15 7 C -0.53 -31.19 9.09 25.60 0.23 -30.96 15 8 H 0.05 3.06 7.74 -2.91 -0.02 3.03 15 9 C 0.05 3.01 5.07 29.10 0.15 3.16 15 10 C -0.04 -1.75 5.03 -20.10 -0.10 -1.85 15 11 C -0.12 -4.72 9.59 22.05 0.21 -4.51 15 12 C -0.09 -2.59 9.77 22.31 0.22 -2.37 15 13 C -0.13 -4.22 5.74 -21.28 -0.12 -4.34 15 14 C -0.05 -1.08 9.90 22.50 0.22 -0.85 15 15 C -0.18 -3.35 10.03 22.15 0.22 -3.12 15 16 C 0.12 2.98 11.15 85.07 0.95 3.93 15 17 N -0.52 -18.66 10.34 -188.64 -1.95 -20.61 15 18 C 0.11 4.31 6.60 40.29 0.27 4.57 15 19 C -0.13 -6.13 9.58 22.34 0.21 -5.91 15 20 H 0.27 15.23 8.31 -92.71 -0.77 14.46 15 21 H 0.00 0.05 8.07 -2.39 -0.02 0.03 15 22 H 0.01 0.83 8.08 -2.39 -0.02 0.81 15 23 H 0.13 4.71 8.06 -2.91 -0.02 4.68 15 24 H 0.17 3.43 8.06 -2.91 -0.02 3.41 15 25 H 0.18 2.20 8.06 -2.91 -0.02 2.18 15 26 H 0.18 1.62 8.06 -2.91 -0.02 1.60 15 27 H 0.19 3.04 8.06 -2.91 -0.02 3.01 15 28 H 0.11 5.09 8.06 -2.91 -0.02 5.07 15 Total: -1.00 -71.92 252.04 4.43 -67.49 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 1.15 Total: 3.86 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 2.92 Total: -41.43 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -1.67 Total: -76.90 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -71.92 4.43 -67.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705916075.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.831 kcal (2) G-P(sol) polarization free energy of solvation -71.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds