Wall clock time and date at job start Sun Mar 29 2020 21:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99843 * 2 1 4 4 H 1.48493 * 109.46863 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46994 * 299.99999 * 3 2 1 6 6 H 1.48496 * 109.47178 * 59.99921 * 3 2 1 7 7 C 1.38809 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00111 * 204.70063 * 7 2 1 9 9 N 1.36937 * 120.00100 * 24.70653 * 7 2 1 10 10 C 1.46499 * 120.00460 * 192.16596 * 9 7 2 11 11 C 1.52998 * 109.46744 * 84.83152 * 10 9 7 12 12 C 1.50695 * 109.47021 * 180.02562 * 11 10 9 13 13 O 1.20829 * 120.00245 * 0.02562 * 12 11 10 14 14 O 1.34238 * 120.00019 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99917 * 12.16848 * 9 7 2 16 16 C 1.52997 * 109.47237 * 270.00309 * 15 9 7 17 17 C 1.53004 * 117.49988 * 243.62254 * 16 15 9 18 18 C 1.53004 * 60.00031 * 252.50540 * 17 16 15 19 19 H 0.96999 * 119.99795 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.47326 * 204.83384 * 10 9 7 21 21 H 1.08997 * 109.46851 * 324.83674 * 10 9 7 22 22 H 1.09004 * 109.47236 * 300.00229 * 11 10 9 23 23 H 1.09007 * 109.47535 * 60.00482 * 11 10 9 24 24 H 0.96696 * 116.99591 * 180.02562 * 14 12 11 25 25 H 1.09005 * 109.47095 * 29.99711 * 15 9 7 26 26 H 1.08992 * 109.47496 * 149.99754 * 15 9 7 27 27 H 1.09005 * 115.55155 * 29.32916 * 16 15 9 28 28 H 1.09002 * 117.49650 * 359.97438 * 17 16 15 29 29 H 1.08992 * 117.50396 * 145.01844 * 17 16 15 30 30 H 1.08998 * 117.50085 * 252.50833 * 18 17 16 31 31 H 1.08999 * 117.50009 * 107.48549 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0162 -1.2447 0.3914 9 7 1.4197 -2.3340 -0.4946 10 6 2.0319 -3.6436 -0.2571 11 6 1.5824 -4.1771 1.1045 12 6 2.2126 -5.5240 1.3492 13 8 2.9463 -6.0074 0.5197 14 8 1.9588 -6.1867 2.4886 15 6 0.1756 -2.2353 -1.2620 16 6 -1.0191 -2.3361 -0.3116 17 6 -1.9569 -3.5332 -0.4801 18 6 -2.4144 -2.1370 -0.9071 19 1 -0.4850 0.8401 0.0004 20 1 1.7221 -4.3367 -1.0392 21 1 3.1173 -3.5447 -0.2684 22 1 1.8923 -3.4840 1.8867 23 1 0.4969 -4.2761 1.1159 24 1 2.3862 -7.0469 2.6006 25 1 0.1453 -1.2786 -1.7835 26 1 0.1315 -3.0466 -1.9885 27 1 -0.8470 -1.9697 0.7005 28 1 -1.7229 -4.2488 -1.2684 29 1 -2.4018 -3.9549 0.4211 30 1 -3.1602 -1.6401 -0.2867 31 1 -2.4811 -1.9342 -1.9760 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717208730.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:38 Heat of formation + Delta-G solvation = -62.229895 kcal Electronic energy + Delta-G solvation = -14599.667161 eV Core-core repulsion = 12075.103988 eV Total energy + Delta-G solvation = -2524.563173 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.13928 -38.75278 -37.09795 -36.38000 -33.84903 -31.38193 -27.98728 -26.41115 -23.36449 -22.96155 -21.51623 -21.08672 -19.06059 -18.59940 -17.42624 -16.95387 -16.63666 -16.09491 -15.47478 -15.05596 -14.70666 -14.10234 -13.89513 -13.37563 -13.15797 -12.80079 -12.64032 -12.46650 -12.18572 -12.09486 -11.90125 -11.88465 -11.69405 -11.53037 -10.87665 -10.51521 -10.13190 -8.83245 -7.74765 -5.12045 1.29545 1.49035 1.54820 1.61970 2.24302 2.59171 3.33027 3.38106 3.72781 4.20514 4.26259 4.31047 4.45809 4.57724 4.76469 4.82486 4.86784 4.95147 5.05302 5.15449 5.26917 5.45555 5.51658 5.65160 5.68370 5.78812 6.08094 6.36530 7.09909 7.23158 7.93060 8.34634 9.23874 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.024319 B = 0.011029 C = 0.008324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.074646 B = 2538.193991 C = 3362.829992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.037 4.037 3 Si 0.947 3.053 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.297 1.297 7 C -0.269 4.269 8 H 0.069 0.931 9 N -0.604 5.604 10 C 0.167 3.833 11 C -0.126 4.126 12 C 0.494 3.506 13 O -0.551 6.551 14 O -0.515 6.515 15 C 0.210 3.790 16 C -0.094 4.094 17 C -0.200 4.200 18 C -0.181 4.181 19 H 0.246 0.754 20 H 0.057 0.943 21 H 0.043 0.957 22 H 0.095 0.905 23 H 0.102 0.898 24 H 0.424 0.576 25 H 0.040 0.960 26 H 0.031 0.969 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.882 -8.509 1.910 8.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.234 4.234 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.225 1.225 7 C -0.399 4.399 8 H 0.087 0.913 9 N -0.324 5.324 10 C 0.040 3.960 11 C -0.166 4.166 12 C 0.338 3.662 13 O -0.443 6.443 14 O -0.328 6.328 15 C 0.085 3.915 16 C -0.115 4.115 17 C -0.237 4.237 18 C -0.219 4.219 19 H 0.055 0.945 20 H 0.075 0.925 21 H 0.061 0.939 22 H 0.113 0.887 23 H 0.121 0.879 24 H 0.285 0.715 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.950 -8.118 1.619 8.333 hybrid contribution 0.503 0.646 0.264 0.860 sum -0.447 -7.473 1.883 7.719 Atomic orbital electron populations 1.70399 1.05338 1.24794 1.53864 1.25310 0.95993 1.00040 1.02073 0.85529 0.78767 0.81591 0.76383 1.20092 1.22273 1.22465 1.19411 0.96647 0.87036 1.36761 0.91276 1.44371 1.25979 1.01601 1.60470 1.20615 0.96513 0.85980 0.92863 1.22157 1.02498 0.89198 1.02780 1.23772 0.77271 0.87178 0.78016 1.90664 1.37318 1.69515 1.46764 1.84566 1.69967 1.38012 1.40262 1.20148 0.83507 0.97229 0.90658 1.22632 0.90436 0.97307 1.01115 1.23177 1.06612 0.91207 1.02752 1.22631 0.99661 0.99425 1.00154 0.94462 0.92450 0.93874 0.88676 0.87938 0.71512 0.94119 0.95088 0.89904 0.89138 0.89351 0.90408 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.29 8.66 21.65 0.19 -48.10 16 2 C -0.04 -1.96 4.85 84.86 0.41 -1.54 16 3 Si 0.95 43.57 29.62 68.60 2.03 45.61 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 6 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 7 C -0.27 -13.97 9.67 84.03 0.81 -13.16 16 8 H 0.07 3.58 7.94 -2.91 -0.02 3.56 16 9 N -0.60 -28.40 2.54 -702.02 -1.78 -30.18 16 10 C 0.17 6.69 5.01 86.38 0.43 7.13 16 11 C -0.13 -4.38 6.11 29.85 0.18 -4.20 16 12 C 0.49 15.30 8.33 71.23 0.59 15.90 16 13 O -0.55 -19.76 16.74 21.95 0.37 -19.40 16 14 O -0.51 -12.25 13.42 -51.49 -0.69 -12.94 16 15 C 0.21 9.55 5.25 86.38 0.45 10.00 16 16 C -0.09 -4.00 4.02 -10.79 -0.04 -4.05 16 17 C -0.20 -6.83 10.18 30.60 0.31 -6.52 16 18 C -0.18 -6.74 10.25 30.60 0.31 -6.43 16 19 H 0.25 13.08 8.31 -92.71 -0.77 12.31 16 20 H 0.06 2.19 7.79 -2.39 -0.02 2.17 16 21 H 0.04 1.78 8.04 -2.39 -0.02 1.76 16 22 H 0.10 3.49 8.14 -2.38 -0.02 3.48 16 23 H 0.10 3.55 7.90 -2.38 -0.02 3.53 16 24 H 0.42 5.77 9.10 -74.06 -0.67 5.09 16 25 H 0.04 2.10 6.56 -2.38 -0.02 2.08 16 26 H 0.03 1.28 7.59 -2.39 -0.02 1.26 16 27 H 0.08 4.15 7.15 -2.38 -0.02 4.13 16 28 H 0.09 2.84 8.03 -2.39 -0.02 2.82 16 29 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -59.09 266.95 4.03 -55.06 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.45 Total: 12.83 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 3.47 Total: -2.88 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -1.60 Total: -78.29 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.32 Total: -32.33 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.61 kcal Total: -59.09 4.03 -55.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717208730.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.167 kcal (2) G-P(sol) polarization free energy of solvation -59.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds