Wall clock time and date at job start Sun Mar 29 2020 21:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37101 * 119.99793 * 2 1 4 4 H 1.08004 * 119.99909 * 201.33035 * 3 2 1 5 5 C 1.38947 * 120.00124 * 21.32772 * 3 2 1 6 6 N 1.31412 * 120.00187 * 17.82082 * 5 3 2 7 7 Si 1.86810 * 119.99802 * 197.82590 * 5 3 2 8 8 H 1.48496 * 109.47443 * 89.99697 * 7 5 3 9 9 H 1.48499 * 109.46817 * 209.99651 * 7 5 3 10 10 H 1.48504 * 109.46803 * 329.99228 * 7 5 3 11 11 C 1.34769 * 120.00377 * 179.97438 * 2 1 3 12 12 O 1.21289 * 120.00609 * 179.97438 * 11 2 1 13 13 C 1.50704 * 119.99759 * 0.02562 * 11 2 1 14 14 H 1.08994 * 115.56622 * 79.52356 * 13 11 2 15 15 C 1.53007 * 117.49654 * 293.83182 * 13 11 2 16 16 C 1.52992 * 60.03166 * 252.52108 * 15 13 11 17 17 H 1.09000 * 117.50451 * 252.49403 * 16 15 13 18 18 C 1.50705 * 117.49521 * 107.50202 * 16 15 13 19 19 O 1.20825 * 120.00391 * 3.87524 * 18 16 15 20 20 O 1.34232 * 120.00012 * 183.87630 * 18 16 15 21 21 H 1.09001 * 109.47220 * 269.12173 * 1 2 3 22 22 H 1.09004 * 109.46952 * 29.11424 * 1 2 3 23 23 H 1.08995 * 109.46923 * 149.12009 * 1 2 3 24 24 H 0.97001 * 119.99655 * 180.02562 * 6 5 3 25 25 H 1.09003 * 117.49414 * 145.01896 * 15 13 11 26 26 H 1.09000 * 117.49527 * 0.02893 * 15 13 11 27 27 H 0.96703 * 117.00246 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1750 1.2194 -0.3402 5 6 1.5271 2.3495 0.4376 6 7 0.4358 2.2754 1.1661 7 14 2.2402 4.0172 -0.0096 8 1 1.6510 4.4798 -1.2918 9 1 1.9229 4.9947 1.0622 10 1 3.7137 3.9026 -0.1547 11 6 2.1389 -1.1671 0.0005 12 8 3.3518 -1.1671 0.0001 13 6 1.3854 -2.4722 0.0005 14 1 0.9958 -2.7904 -0.9664 15 6 0.5568 -2.8096 1.2418 16 6 1.8598 -3.5621 0.9650 17 1 1.7824 -4.5973 0.6326 18 6 3.0444 -3.2481 1.8421 19 8 2.9243 -2.4809 2.7678 20 8 4.2331 -3.8206 1.5949 21 1 -0.3634 -0.0158 1.0275 22 1 -0.3633 0.8979 -0.5000 23 1 -0.3633 -0.8820 -0.5274 24 1 0.0005 3.0868 1.4712 25 1 -0.3780 -3.3496 1.0913 26 1 0.5564 -2.0872 2.0581 27 1 4.9635 -3.5881 2.1844 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737388392.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:06 Heat of formation + Delta-G solvation = -89.476080 kcal Electronic energy + Delta-G solvation = -14521.803306 eV Core-core repulsion = 11860.225555 eV Total energy + Delta-G solvation = -2661.577751 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.07807 -38.42608 -36.03349 -35.17740 -34.56341 -31.53511 -26.54951 -25.45097 -24.63423 -22.76843 -20.37815 -18.81555 -17.61786 -16.89308 -16.54858 -15.43625 -15.28918 -14.45587 -14.35891 -14.02745 -13.37423 -13.01275 -12.13769 -11.78494 -11.61941 -11.35721 -11.21568 -11.04453 -10.87821 -10.46031 -10.34157 -10.29854 -10.17334 -9.94230 -9.00247 -8.43016 -7.67532 -6.33233 -3.84729 2.65950 3.16688 3.26267 3.31584 3.38959 3.78607 4.06931 4.19788 4.73108 5.02950 5.08008 5.18932 5.41453 5.61707 5.82328 5.99107 6.14193 6.36206 6.42095 6.84977 7.02496 7.19646 7.58645 8.12515 8.44454 8.48359 9.18187 9.42475 9.97687 10.71891 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.043187 B = 0.009812 C = 0.009001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.189413 B = 2852.954803 C = 3109.902512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.433 5.433 3 C -0.310 4.310 4 H 0.099 0.901 5 C 0.032 3.968 6 N -0.875 5.875 7 Si 0.925 3.075 8 H -0.277 1.277 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.464 3.536 12 O -0.585 6.585 13 C -0.133 4.133 14 H 0.128 0.872 15 C -0.133 4.133 16 C -0.148 4.148 17 H 0.134 0.866 18 C 0.520 3.480 19 O -0.509 6.509 20 O -0.513 6.513 21 H 0.056 0.944 22 H 0.068 0.932 23 H 0.030 0.970 24 H 0.268 0.732 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.283 -8.901 -1.149 9.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.151 5.151 3 C -0.438 4.438 4 H 0.117 0.883 5 C -0.172 4.172 6 N -0.513 5.513 7 Si 0.752 3.248 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.251 3.749 12 O -0.470 6.470 13 C -0.154 4.154 14 H 0.146 0.854 15 C -0.170 4.170 16 C -0.168 4.168 17 H 0.152 0.848 18 C 0.362 3.638 19 O -0.397 6.397 20 O -0.324 6.324 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.048 0.952 24 H 0.078 0.922 25 H 0.129 0.871 26 H 0.132 0.868 27 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -2.204 -8.609 -1.062 8.950 hybrid contribution 0.594 0.975 0.213 1.161 sum -1.610 -7.634 -0.849 7.848 Atomic orbital electron populations 1.21481 0.81037 0.99250 1.01355 1.43494 1.05569 1.04486 1.61519 1.19667 0.99178 0.83338 1.41574 0.88283 1.25316 0.96727 1.00049 0.95074 1.70042 1.20158 1.29330 1.31780 0.85944 0.79608 0.81209 0.78062 1.20315 1.20950 1.19358 1.19045 0.87445 0.83762 0.84651 1.90534 1.13623 1.86640 1.56188 1.22331 1.02025 0.95002 0.96078 0.85412 1.23190 0.92393 1.01640 0.99821 1.21629 0.92900 0.99296 1.02933 0.84800 1.21956 0.83069 0.76401 0.82341 1.90711 1.84728 1.33207 1.31020 1.84431 1.20650 1.67784 1.59509 0.92501 0.91316 0.95176 0.92201 0.87094 0.86760 0.73661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.52 7.89 59.85 0.47 2.99 15 2 N -0.43 -11.40 3.02 -122.19 -0.37 -11.76 15 3 C -0.31 -8.90 9.27 -14.93 -0.14 -9.04 15 4 H 0.10 2.99 7.42 -52.48 -0.39 2.60 15 5 C 0.03 0.87 4.95 -17.47 -0.09 0.79 15 6 N -0.87 -23.80 10.94 55.50 0.61 -23.19 15 7 Si 0.93 21.12 29.59 -169.99 -5.03 16.09 15 8 H -0.28 -6.13 7.11 56.52 0.40 -5.72 15 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 11 C 0.46 11.69 6.74 -10.99 -0.07 11.61 15 12 O -0.58 -16.84 15.37 5.55 0.09 -16.76 15 13 C -0.13 -2.45 4.59 -91.73 -0.42 -2.88 15 14 H 0.13 1.93 8.14 -51.93 -0.42 1.50 15 15 C -0.13 -2.13 8.83 -26.73 -0.24 -2.36 15 16 C -0.15 -2.46 6.30 -91.74 -0.58 -3.04 15 17 H 0.13 1.67 8.14 -51.93 -0.42 1.24 15 18 C 0.52 10.29 6.17 36.01 0.22 10.51 15 19 O -0.51 -11.93 17.00 -18.75 -0.32 -12.25 15 20 O -0.51 -8.66 13.42 -39.26 -0.53 -9.18 15 21 H 0.06 1.32 7.72 -51.93 -0.40 0.92 15 22 H 0.07 1.61 6.96 -51.93 -0.36 1.25 15 23 H 0.03 0.54 6.82 -51.93 -0.35 0.19 15 24 H 0.27 6.87 8.31 -40.82 -0.34 6.53 15 25 H 0.11 1.28 8.14 -51.93 -0.42 0.86 15 26 H 0.11 2.19 7.68 -51.93 -0.40 1.80 15 27 H 0.41 5.16 9.10 45.56 0.41 5.58 15 LS Contribution 243.83 15.07 3.67 3.67 Total: -1.00 -35.24 243.83 -4.61 -39.85 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -1.89 Total: 4.95 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -0.84 Total: 8.59 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.24 Total: -34.96 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -0.76 Total: -38.19 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -35.24 -4.61 -39.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737388392.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.625 kcal (2) G-P(sol) polarization free energy of solvation -35.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds