Wall clock time and date at job start Sun Mar 29 2020 21:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37090 * 120.00225 * 2 1 4 4 H 1.08001 * 120.00214 * 154.91882 * 3 2 1 5 5 C 1.38948 * 120.00185 * 334.91679 * 3 2 1 6 6 N 1.31411 * 119.99870 * 348.71848 * 5 3 2 7 7 Si 1.86803 * 120.00134 * 168.71187 * 5 3 2 8 8 H 1.48508 * 109.46783 * 180.02562 * 7 5 3 9 9 H 1.48500 * 109.47238 * 300.00271 * 7 5 3 10 10 H 1.48496 * 109.47059 * 60.00318 * 7 5 3 11 11 C 1.34782 * 120.00008 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00257 * 179.97438 * 11 2 1 13 13 C 1.50706 * 119.99672 * 0.02562 * 11 2 1 14 14 H 1.09000 * 115.54888 * 325.72249 * 13 11 2 15 15 C 1.52997 * 117.49910 * 111.38948 * 13 11 2 16 16 C 1.52996 * 60.00021 * 107.48721 * 15 13 11 17 17 H 1.09003 * 117.50460 * 252.51317 * 16 15 13 18 18 C 1.50701 * 117.49666 * 107.48962 * 16 15 13 19 19 O 1.20823 * 120.00013 * 291.37491 * 18 16 15 20 20 O 1.34227 * 119.99788 * 111.38177 * 18 16 15 21 21 H 1.08999 * 109.46942 * 95.12700 * 1 2 3 22 22 H 1.08999 * 109.47151 * 215.12450 * 1 2 3 23 23 H 1.09002 * 109.46766 * 335.12646 * 1 2 3 24 24 H 0.97005 * 120.00583 * 179.97438 * 6 5 3 25 25 H 1.08998 * 117.50255 * 214.97570 * 15 13 11 26 26 H 1.09006 * 117.49787 * 0.02562 * 15 13 11 27 27 H 0.96704 * 116.99743 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1541 1.2313 0.3965 5 6 1.5541 2.3338 -0.5101 6 7 0.4328 2.2446 -1.1896 7 14 2.3461 4.0023 -0.2299 8 1 1.5189 5.0566 -0.8700 9 1 2.4420 4.2662 1.2283 10 1 3.7067 4.0106 -0.8250 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0001 13 6 1.3853 -2.4724 0.0005 14 1 0.4463 -2.4730 0.5540 15 6 1.4612 -3.3319 -1.2629 16 6 2.2074 -3.7627 0.0014 17 1 3.2933 -3.6677 0.0020 18 6 1.6570 -4.9378 0.7678 19 8 0.6038 -4.8387 1.3514 20 8 2.3371 -6.0946 0.8021 21 1 -0.3633 -0.0918 -1.0236 22 1 -0.3633 -0.8405 0.5913 23 1 -0.3633 0.9324 0.4323 24 1 0.0162 3.0450 -1.5454 25 1 0.5723 -3.8984 -1.5404 26 1 2.0565 -2.9536 -2.0940 27 1 1.9440 -6.8201 1.3063 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737388393.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:08 Heat of formation + Delta-G solvation = -92.123026 kcal Electronic energy + Delta-G solvation = -14033.687637 eV Core-core repulsion = 11371.995106 eV Total energy + Delta-G solvation = -2661.692531 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.35668 -38.67761 -36.35478 -35.51961 -34.43828 -31.60470 -26.68535 -25.68673 -24.60262 -22.76844 -20.65792 -18.58924 -18.05350 -17.14670 -16.79846 -15.55999 -15.50284 -14.75111 -14.25478 -14.12728 -13.45818 -13.14857 -12.20039 -11.92948 -11.68682 -11.53980 -11.35142 -11.28037 -10.86864 -10.58804 -10.42772 -10.38862 -10.18694 -10.14481 -9.01843 -8.48168 -7.68816 -6.35049 -3.92304 2.18340 2.99840 3.16974 3.23578 3.27848 3.54956 4.08869 4.29206 4.74913 4.95373 5.03667 5.28137 5.45893 5.48994 5.73927 5.91115 6.21037 6.27801 6.44132 6.52970 6.87255 7.21009 7.53520 7.97594 8.11219 8.45232 9.14347 9.38022 9.94449 10.69421 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.067179 B = 0.007140 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.699016 B = 3920.692016 C = 4095.635822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.435 5.435 3 C -0.308 4.308 4 H 0.098 0.902 5 C 0.032 3.968 6 N -0.880 5.880 7 Si 0.929 3.071 8 H -0.284 1.284 9 H -0.273 1.273 10 H -0.272 1.272 11 C 0.470 3.530 12 O -0.589 6.589 13 C -0.131 4.131 14 H 0.127 0.873 15 C -0.121 4.121 16 C -0.152 4.152 17 H 0.146 0.854 18 C 0.513 3.487 19 O -0.518 6.518 20 O -0.512 6.512 21 H 0.053 0.947 22 H 0.028 0.972 23 H 0.076 0.924 24 H 0.269 0.731 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.456 -9.687 0.925 9.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.152 5.152 3 C -0.436 4.436 4 H 0.116 0.884 5 C -0.172 4.172 6 N -0.519 5.519 7 Si 0.755 3.245 8 H -0.209 1.209 9 H -0.199 1.199 10 H -0.197 1.197 11 C 0.258 3.742 12 O -0.474 6.474 13 C -0.153 4.153 14 H 0.145 0.855 15 C -0.159 4.159 16 C -0.171 4.171 17 H 0.163 0.837 18 C 0.357 3.643 19 O -0.407 6.407 20 O -0.324 6.324 21 H 0.071 0.929 22 H 0.047 0.953 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.122 0.878 26 H 0.132 0.868 27 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -1.139 -9.143 0.765 9.245 hybrid contribution -0.160 0.333 0.440 0.574 sum -1.298 -8.810 1.205 8.987 Atomic orbital electron populations 1.21553 0.80986 1.00231 1.00650 1.43456 1.05637 1.04404 1.61752 1.19628 1.01089 0.84159 1.38713 0.88397 1.25379 0.96555 1.00223 0.95000 1.69982 1.18716 1.29953 1.33230 0.85960 0.79078 0.80718 0.78717 1.20900 1.19854 1.19718 1.18995 0.87300 0.83669 0.84258 1.90515 1.13667 1.86821 1.56420 1.22421 1.00781 0.90060 1.02019 0.85484 1.22980 1.01304 1.00570 0.91007 1.21624 1.01818 0.91185 1.02506 0.83652 1.22492 0.81482 0.82729 0.77629 1.90695 1.23495 1.83398 1.43097 1.84542 1.54243 1.23165 1.70428 0.92861 0.95327 0.90503 0.92088 0.87847 0.86785 0.73501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.48 8.45 59.85 0.51 2.98 15 2 N -0.44 -11.28 3.01 -122.19 -0.37 -11.65 15 3 C -0.31 -8.61 9.23 -14.94 -0.14 -8.74 15 4 H 0.10 2.84 7.45 -52.49 -0.39 2.45 15 5 C 0.03 0.84 5.07 -17.47 -0.09 0.76 15 6 N -0.88 -23.35 10.80 55.50 0.60 -22.75 15 7 Si 0.93 20.65 29.57 -169.99 -5.03 15.63 15 8 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 9 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 11 C 0.47 11.57 7.41 -10.98 -0.08 11.49 15 12 O -0.59 -16.25 15.98 5.55 0.09 -16.17 15 13 C -0.13 -2.52 4.81 -91.77 -0.44 -2.97 15 14 H 0.13 2.36 6.04 -51.93 -0.31 2.05 15 15 C -0.12 -1.89 9.94 -26.73 -0.27 -2.16 15 16 C -0.15 -2.53 5.81 -91.77 -0.53 -3.06 15 17 H 0.15 2.52 7.67 -51.93 -0.40 2.12 15 18 C 0.51 7.78 8.11 36.01 0.29 8.07 15 19 O -0.52 -9.06 17.02 -18.75 -0.32 -9.37 15 20 O -0.51 -5.97 13.42 -39.25 -0.53 -6.50 15 21 H 0.05 1.22 7.86 -51.93 -0.41 0.81 15 22 H 0.03 0.55 6.22 -51.93 -0.32 0.23 15 23 H 0.08 1.83 6.74 -51.93 -0.35 1.48 15 24 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 25 H 0.10 1.36 8.14 -51.93 -0.42 0.94 15 26 H 0.11 1.79 8.14 -51.93 -0.42 1.37 15 27 H 0.41 2.70 9.10 45.56 0.41 3.11 15 LS Contribution 245.65 15.07 3.70 3.70 Total: -1.00 -32.43 245.65 -4.35 -36.78 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -1.75 Total: 3.95 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -0.75 Total: 6.37 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.23 Total: -34.39 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.76 Total: -32.04 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.43 -4.35 -36.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737388393.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.341 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds