Wall clock time and date at job start Sun Mar 29 2020 21:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37090 * 120.00225 * 2 1 4 4 H 1.08001 * 120.00214 * 154.91882 * 3 2 1 5 5 C 1.38948 * 120.00185 * 334.91679 * 3 2 1 6 6 N 1.31411 * 119.99870 * 348.71848 * 5 3 2 7 7 Si 1.86803 * 120.00134 * 168.71187 * 5 3 2 8 8 H 1.48508 * 109.46783 * 180.02562 * 7 5 3 9 9 H 1.48500 * 109.47238 * 300.00271 * 7 5 3 10 10 H 1.48496 * 109.47059 * 60.00318 * 7 5 3 11 11 C 1.34782 * 120.00008 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00257 * 179.97438 * 11 2 1 13 13 C 1.50706 * 119.99672 * 0.02562 * 11 2 1 14 14 H 1.09000 * 115.54888 * 325.72249 * 13 11 2 15 15 C 1.52997 * 117.49910 * 111.38948 * 13 11 2 16 16 C 1.52996 * 60.00021 * 107.48721 * 15 13 11 17 17 H 1.09003 * 117.50460 * 252.51317 * 16 15 13 18 18 C 1.50701 * 117.49666 * 107.48962 * 16 15 13 19 19 O 1.20823 * 120.00013 * 291.37491 * 18 16 15 20 20 O 1.34227 * 119.99788 * 111.38177 * 18 16 15 21 21 H 1.08999 * 109.46942 * 95.12700 * 1 2 3 22 22 H 1.08999 * 109.47151 * 215.12450 * 1 2 3 23 23 H 1.09002 * 109.46766 * 335.12646 * 1 2 3 24 24 H 0.97005 * 120.00583 * 179.97438 * 6 5 3 25 25 H 1.08998 * 117.50255 * 214.97570 * 15 13 11 26 26 H 1.09006 * 117.49787 * 0.02562 * 15 13 11 27 27 H 0.96704 * 116.99743 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1541 1.2313 0.3965 5 6 1.5541 2.3338 -0.5101 6 7 0.4328 2.2446 -1.1896 7 14 2.3461 4.0023 -0.2299 8 1 1.5189 5.0566 -0.8700 9 1 2.4420 4.2662 1.2283 10 1 3.7067 4.0106 -0.8250 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0001 13 6 1.3853 -2.4724 0.0005 14 1 0.4463 -2.4730 0.5540 15 6 1.4612 -3.3319 -1.2629 16 6 2.2074 -3.7627 0.0014 17 1 3.2933 -3.6677 0.0020 18 6 1.6570 -4.9378 0.7678 19 8 0.6038 -4.8387 1.3514 20 8 2.3371 -6.0946 0.8021 21 1 -0.3633 -0.0918 -1.0236 22 1 -0.3633 -0.8405 0.5913 23 1 -0.3633 0.9324 0.4323 24 1 0.0162 3.0450 -1.5454 25 1 0.5723 -3.8984 -1.5404 26 1 2.0565 -2.9536 -2.0940 27 1 1.9440 -6.8201 1.3063 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737388393.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:08 Heat of formation + Delta-G solvation = -115.207830 kcal Electronic energy + Delta-G solvation = -14034.688669 eV Core-core repulsion = 11371.995106 eV Total energy + Delta-G solvation = -2662.693563 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.62369 -40.39200 -37.67644 -36.93679 -36.30011 -33.62904 -28.56716 -27.29450 -26.20562 -24.40231 -21.91269 -20.23576 -19.37714 -18.86948 -18.44424 -17.20358 -16.76246 -16.47771 -16.05022 -15.89078 -14.94196 -14.74636 -13.79751 -13.62447 -13.23031 -13.18746 -13.12089 -12.66686 -12.61997 -12.40136 -12.14805 -11.81537 -11.64478 -11.57410 -11.00171 -10.43545 -9.69742 -8.35874 -6.02541 0.98130 1.38246 1.41676 1.52207 1.78288 1.93952 2.28945 2.74731 3.01795 3.14470 3.55166 3.82276 3.97060 4.14716 4.36034 4.62563 4.66488 4.88038 4.96623 5.05870 5.35385 5.42664 5.53984 6.07686 6.44844 6.98446 7.12363 7.41665 7.97977 8.67023 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.067179 B = 0.007140 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.699016 B = 3920.692016 C = 4095.635822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.453 5.453 3 C -0.349 4.349 4 H 0.073 0.927 5 C 0.000 4.000 6 N -0.894 5.894 7 Si 0.992 3.008 8 H -0.269 1.269 9 H -0.268 1.268 10 H -0.275 1.275 11 C 0.463 3.537 12 O -0.630 6.630 13 C -0.152 4.152 14 H 0.136 0.864 15 C -0.094 4.094 16 C -0.146 4.146 17 H 0.136 0.864 18 C 0.527 3.473 19 O -0.542 6.542 20 O -0.501 6.501 21 H 0.048 0.952 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.275 0.725 25 H 0.138 0.862 26 H 0.112 0.888 27 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.149 -10.556 0.712 10.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.170 5.170 3 C -0.477 4.477 4 H 0.091 0.909 5 C -0.202 4.202 6 N -0.531 5.531 7 Si 0.815 3.185 8 H -0.193 1.193 9 H -0.193 1.193 10 H -0.201 1.201 11 C 0.252 3.748 12 O -0.519 6.519 13 C -0.173 4.173 14 H 0.154 0.846 15 C -0.132 4.132 16 C -0.166 4.166 17 H 0.153 0.847 18 C 0.371 3.629 19 O -0.433 6.433 20 O -0.315 6.315 21 H 0.066 0.934 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.156 0.844 26 H 0.130 0.870 27 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -1.858 -10.051 0.555 10.236 hybrid contribution 0.095 0.509 0.500 0.720 sum -1.762 -9.542 1.055 9.761 Atomic orbital electron populations 1.21489 0.79302 1.00744 1.00766 1.43717 1.06826 1.04434 1.62034 1.19615 1.00985 0.86120 1.40936 0.90933 1.26127 0.96972 1.03013 0.94084 1.70045 1.19175 1.31120 1.32806 0.85029 0.78054 0.76590 0.78860 1.19308 1.19252 1.20070 1.19845 0.87203 0.85157 0.82583 1.90469 1.15666 1.87796 1.57921 1.22156 1.01078 0.88281 1.05792 0.84596 1.23139 1.02080 0.98275 0.89698 1.21563 1.01150 0.90646 1.03206 0.84658 1.21991 0.80943 0.83136 0.76843 1.90700 1.24543 1.83959 1.44091 1.84471 1.53620 1.22868 1.70509 0.93354 0.91995 0.92144 0.91502 0.84421 0.86997 0.70548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.40 8.45 127.77 1.08 6.48 15 2 N -0.45 -23.89 3.01 -658.88 -1.98 -25.87 15 3 C -0.35 -20.03 9.23 84.04 0.78 -19.25 15 4 H 0.07 4.42 7.45 -2.91 -0.02 4.40 15 5 C 0.00 0.02 5.07 84.93 0.43 0.45 15 6 N -0.89 -47.24 10.80 21.66 0.23 -47.00 15 7 Si 0.99 42.34 29.57 68.60 2.03 44.37 15 8 H -0.27 -10.75 7.11 99.48 0.71 -10.04 15 9 H -0.27 -11.13 7.11 99.48 0.71 -10.42 15 10 H -0.28 -11.85 7.11 99.48 0.71 -11.14 15 11 C 0.46 23.12 7.41 87.66 0.65 23.77 15 12 O -0.63 -35.88 15.98 -3.06 -0.05 -35.93 15 13 C -0.15 -5.68 4.81 -11.54 -0.06 -5.73 15 14 H 0.14 4.82 6.04 -2.39 -0.01 4.81 15 15 C -0.09 -2.74 9.94 30.59 0.30 -2.44 15 16 C -0.15 -4.62 5.81 -11.54 -0.07 -4.69 15 17 H 0.14 4.60 7.67 -2.39 -0.02 4.58 15 18 C 0.53 14.59 8.11 71.24 0.58 15.17 15 19 O -0.54 -17.59 17.02 21.97 0.37 -17.21 15 20 O -0.50 -10.03 13.42 -51.39 -0.69 -10.72 15 21 H 0.05 2.19 7.86 -2.39 -0.02 2.17 15 22 H 0.06 2.32 6.22 -2.39 -0.01 2.31 15 23 H 0.06 2.88 6.74 -2.39 -0.02 2.86 15 24 H 0.28 13.60 8.31 -92.70 -0.77 12.83 15 25 H 0.14 3.08 8.14 -2.39 -0.02 3.06 15 26 H 0.11 3.33 8.14 -2.38 -0.02 3.31 15 27 H 0.43 4.13 9.10 -74.05 -0.67 3.45 15 Total: -1.00 -70.57 245.65 4.14 -66.43 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.53 Total: 12.17 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 3.69 Total: 13.77 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -1.75 Total: -72.88 kcal Atomic # 8 Polarization: -63.49 SS G_CDS: -0.36 Total: -63.86 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -70.57 4.14 -66.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737388393.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.779 kcal (2) G-P(sol) polarization free energy of solvation -70.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds