Wall clock time and date at job start Sun Mar 29 2020 21:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 119.99810 * 2 1 4 4 H 1.48498 * 109.46908 * 269.72594 * 3 2 1 5 5 H 1.48500 * 109.47316 * 29.72459 * 3 2 1 6 6 H 1.48498 * 109.47005 * 149.72679 * 3 2 1 7 7 C 1.38954 * 119.99824 * 179.72669 * 2 1 3 8 8 H 1.07995 * 119.99405 * 158.95468 * 7 2 1 9 9 N 1.37092 * 120.00251 * 338.95302 * 7 2 1 10 10 C 1.46510 * 119.99932 * 343.53021 * 9 7 2 11 11 C 1.50706 * 109.46824 * 95.99985 * 10 9 7 12 12 O 1.20821 * 119.99809 * 359.97438 * 11 10 9 13 13 O 1.34225 * 119.99758 * 180.02562 * 11 10 9 14 14 C 1.34773 * 120.00038 * 163.53004 * 9 7 2 15 15 O 1.21287 * 120.00056 * 0.02562 * 14 9 7 16 16 C 1.50706 * 119.99862 * 179.97438 * 14 9 7 17 17 C 1.52996 * 117.49960 * 248.62036 * 16 14 9 18 18 C 1.53002 * 60.00257 * 252.51487 * 17 16 14 19 19 H 0.96997 * 120.00404 * 0.27392 * 1 2 3 20 20 H 1.08997 * 109.46812 * 215.99848 * 10 9 7 21 21 H 1.09000 * 109.46949 * 335.99895 * 10 9 7 22 22 H 0.96699 * 116.99794 * 180.02562 * 13 11 10 23 23 H 1.09001 * 115.54895 * 34.33655 * 16 14 9 24 24 H 1.08995 * 117.50079 * 0.02562 * 17 16 14 25 25 H 1.08998 * 117.49334 * 145.02107 * 17 16 14 26 26 H 1.08999 * 117.49867 * 252.51625 * 18 17 16 27 27 H 1.08999 * 117.51717 * 107.47954 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.5013 2.0431 -1.4001 5 1 1.4426 2.6544 0.6942 6 1 3.5427 1.4419 0.7058 7 6 2.0089 -1.2034 0.0057 8 1 3.0348 -1.2361 -0.3300 9 7 1.3920 -2.3490 0.4376 10 6 0.1557 -2.2653 1.2192 11 6 -1.0298 -2.4268 0.3029 12 8 -0.8595 -2.5941 -0.8815 13 8 -2.2749 -2.3837 0.8025 14 6 1.9229 -3.5523 0.1431 15 8 2.9466 -3.6216 -0.5036 16 6 1.2451 -4.8116 0.6183 17 6 1.9581 -5.6354 1.6924 18 6 1.8970 -6.1463 0.2515 19 1 -0.4850 0.8400 -0.0040 20 1 0.1458 -3.0562 1.9691 21 1 0.1034 -1.2952 1.7136 22 1 -3.0033 -2.4926 0.1758 23 1 0.1561 -4.7756 0.6513 24 1 2.9172 -5.2665 2.0557 25 1 1.3382 -6.1415 2.4325 26 1 1.2370 -6.9885 0.0436 27 1 2.8160 -6.1135 -0.3338 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739077156.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:16 Heat of formation + Delta-G solvation = -87.914998 kcal Electronic energy + Delta-G solvation = -14719.320552 eV Core-core repulsion = 12057.810495 eV Total energy + Delta-G solvation = -2661.510057 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.52218 -38.38811 -35.87602 -35.01216 -34.33810 -31.70412 -27.71789 -25.58331 -22.82439 -21.99694 -21.04646 -18.52118 -17.19977 -16.94981 -16.61636 -15.59469 -14.94535 -14.54244 -14.30633 -14.02279 -13.25994 -13.02684 -12.04243 -11.79876 -11.57635 -11.49856 -11.11945 -10.95132 -10.48253 -10.41586 -10.38170 -10.12466 -9.84818 -9.63570 -9.04050 -8.52684 -7.91130 -6.45509 -3.89119 3.12662 3.23718 3.30125 3.39888 3.56205 4.00900 4.17459 4.46228 4.68829 5.06510 5.26946 5.40162 5.46075 5.87510 5.92884 5.94065 6.15897 6.39480 6.46073 6.56902 6.60573 7.48092 7.54178 7.99398 8.37262 9.02403 9.08862 9.31304 9.86526 10.63562 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.029345 B = 0.013542 C = 0.010185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.938340 B = 2067.166240 C = 2748.482171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.028 3.972 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.107 0.893 9 N -0.429 5.429 10 C 0.148 3.852 11 C 0.488 3.512 12 O -0.503 6.503 13 O -0.535 6.535 14 C 0.489 3.511 15 O -0.577 6.577 16 C -0.177 4.177 17 C -0.163 4.163 18 C -0.153 4.153 19 H 0.271 0.729 20 H 0.079 0.921 21 H 0.129 0.871 22 H 0.391 0.609 23 H 0.105 0.895 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 -5.125 5.916 8.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.175 4.175 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.148 5.148 10 C 0.021 3.979 11 C 0.328 3.672 12 O -0.389 6.389 13 O -0.346 6.346 14 C 0.278 3.722 15 O -0.460 6.460 16 C -0.199 4.199 17 C -0.200 4.200 18 C -0.190 4.190 19 H 0.081 0.919 20 H 0.097 0.903 21 H 0.146 0.854 22 H 0.248 0.752 23 H 0.123 0.877 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.578 -4.975 5.532 7.874 hybrid contribution -0.579 0.951 -0.597 1.263 sum -3.158 -4.024 4.935 7.108 Atomic orbital electron populations 1.69801 1.06064 1.27886 1.48556 1.25246 0.95338 1.00010 0.96869 0.85870 0.79372 0.80543 0.78569 1.20386 1.20765 1.19327 1.19717 0.97590 0.83416 1.42426 0.87493 1.43358 1.19729 1.05239 1.46471 1.20690 0.81248 1.04743 0.91209 1.23907 0.83184 0.70882 0.89237 1.90618 1.85614 1.44866 1.17753 1.84528 1.17405 1.86337 1.46319 1.19149 0.86784 0.83334 0.82914 1.90505 1.26341 1.86355 1.42810 1.22219 0.99066 0.92783 1.05821 1.22869 1.02250 1.02954 0.91949 1.22813 1.03204 0.95118 0.97885 0.91888 0.90296 0.85373 0.75223 0.87671 0.88505 0.88693 0.88900 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.40 9.26 55.50 0.51 -22.88 15 2 C 0.03 0.73 4.89 -17.46 -0.09 0.64 15 3 Si 0.93 20.62 29.60 -169.99 -5.03 15.59 15 4 H -0.28 -6.29 7.11 56.52 0.40 -5.88 15 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 7 C -0.30 -8.51 9.35 -14.93 -0.14 -8.65 15 8 H 0.11 3.13 7.37 -52.49 -0.39 2.74 15 9 N -0.43 -11.11 2.18 -116.09 -0.25 -11.36 15 10 C 0.15 3.27 4.85 -5.19 -0.03 3.25 15 11 C 0.49 10.98 5.72 36.01 0.21 11.19 15 12 O -0.50 -13.38 16.80 -18.75 -0.32 -13.70 15 13 O -0.53 -9.68 13.42 -39.24 -0.53 -10.20 15 14 C 0.49 12.38 7.20 -10.98 -0.08 12.31 15 15 O -0.58 -16.49 15.90 5.55 0.09 -16.40 15 16 C -0.18 -3.48 4.81 -91.77 -0.44 -3.92 15 17 C -0.16 -2.53 10.23 -26.73 -0.27 -2.80 15 18 C -0.15 -2.56 10.04 -26.73 -0.27 -2.82 15 19 H 0.27 6.84 8.31 -40.82 -0.34 6.50 15 20 H 0.08 1.43 6.99 -51.93 -0.36 1.07 15 21 H 0.13 2.93 6.34 -51.93 -0.33 2.60 15 22 H 0.39 5.43 9.10 45.56 0.41 5.85 15 23 H 0.11 1.96 6.73 -51.93 -0.35 1.61 15 24 H 0.10 1.55 8.14 -51.93 -0.42 1.13 15 25 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 26 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 27 H 0.10 1.90 7.67 -51.93 -0.40 1.51 15 LS Contribution 242.51 15.07 3.65 3.65 Total: -1.00 -33.72 242.51 -4.79 -38.51 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -1.81 Total: 7.60 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -1.11 Total: 9.18 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.26 Total: -34.24 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -0.75 Total: -40.30 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -33.72 -4.79 -38.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077156.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.405 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds