Wall clock time and date at job start Sun Mar 29 2020 21:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 119.99810 * 2 1 4 4 H 1.48498 * 109.46908 * 269.72594 * 3 2 1 5 5 H 1.48500 * 109.47316 * 29.72459 * 3 2 1 6 6 H 1.48498 * 109.47005 * 149.72679 * 3 2 1 7 7 C 1.38954 * 119.99824 * 179.72669 * 2 1 3 8 8 H 1.07995 * 119.99405 * 158.95468 * 7 2 1 9 9 N 1.37092 * 120.00251 * 338.95302 * 7 2 1 10 10 C 1.46510 * 119.99932 * 343.53021 * 9 7 2 11 11 C 1.50706 * 109.46824 * 95.99985 * 10 9 7 12 12 O 1.20821 * 119.99809 * 359.97438 * 11 10 9 13 13 O 1.34225 * 119.99758 * 180.02562 * 11 10 9 14 14 C 1.34773 * 120.00038 * 163.53004 * 9 7 2 15 15 O 1.21287 * 120.00056 * 0.02562 * 14 9 7 16 16 C 1.50706 * 119.99862 * 179.97438 * 14 9 7 17 17 C 1.52996 * 117.49960 * 248.62036 * 16 14 9 18 18 C 1.53002 * 60.00257 * 252.51487 * 17 16 14 19 19 H 0.96997 * 120.00404 * 0.27392 * 1 2 3 20 20 H 1.08997 * 109.46812 * 215.99848 * 10 9 7 21 21 H 1.09000 * 109.46949 * 335.99895 * 10 9 7 22 22 H 0.96699 * 116.99794 * 180.02562 * 13 11 10 23 23 H 1.09001 * 115.54895 * 34.33655 * 16 14 9 24 24 H 1.08995 * 117.50079 * 0.02562 * 17 16 14 25 25 H 1.08998 * 117.49334 * 145.02107 * 17 16 14 26 26 H 1.08999 * 117.49867 * 252.51625 * 18 17 16 27 27 H 1.08999 * 117.51717 * 107.47954 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.5013 2.0431 -1.4001 5 1 1.4426 2.6544 0.6942 6 1 3.5427 1.4419 0.7058 7 6 2.0089 -1.2034 0.0057 8 1 3.0348 -1.2361 -0.3300 9 7 1.3920 -2.3490 0.4376 10 6 0.1557 -2.2653 1.2192 11 6 -1.0298 -2.4268 0.3029 12 8 -0.8595 -2.5941 -0.8815 13 8 -2.2749 -2.3837 0.8025 14 6 1.9229 -3.5523 0.1431 15 8 2.9466 -3.6216 -0.5036 16 6 1.2451 -4.8116 0.6183 17 6 1.9581 -5.6354 1.6924 18 6 1.8970 -6.1463 0.2515 19 1 -0.4850 0.8400 -0.0040 20 1 0.1458 -3.0562 1.9691 21 1 0.1034 -1.2952 1.7136 22 1 -3.0033 -2.4926 0.1758 23 1 0.1561 -4.7756 0.6513 24 1 2.9172 -5.2665 2.0557 25 1 1.3382 -6.1415 2.4325 26 1 1.2370 -6.9885 0.0436 27 1 2.8160 -6.1135 -0.3338 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739077156.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:16 Heat of formation + Delta-G solvation = -112.212444 kcal Electronic energy + Delta-G solvation = -14720.374169 eV Core-core repulsion = 12057.810495 eV Total energy + Delta-G solvation = -2662.563673 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.31159 -40.14844 -37.48586 -36.70359 -36.23334 -33.71690 -29.56109 -27.48284 -24.55610 -23.25517 -22.76834 -20.27968 -19.07851 -18.70519 -18.38922 -17.37804 -16.74895 -16.26752 -15.98943 -15.72902 -15.00206 -14.81927 -13.77197 -13.61404 -13.37792 -13.21247 -12.70538 -12.47089 -12.36783 -12.18435 -12.11947 -11.58218 -11.44161 -11.29429 -10.97921 -10.47516 -9.89464 -8.46282 -5.98137 1.33797 1.41500 1.55341 1.64838 1.80850 2.24121 2.50564 2.87102 2.91169 3.22610 3.79734 3.91636 4.10864 4.30410 4.37427 4.74214 4.75335 4.84982 4.96393 5.07527 5.29544 5.42654 5.93669 5.99349 6.37428 7.07882 7.28283 7.44302 7.92154 8.60709 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.029345 B = 0.013542 C = 0.010185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.938340 B = 2067.166240 C = 2748.482171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C -0.001 4.001 3 Si 0.995 3.005 4 H -0.284 1.284 5 H -0.263 1.263 6 H -0.267 1.267 7 C -0.346 4.346 8 H 0.077 0.923 9 N -0.442 5.442 10 C 0.145 3.855 11 C 0.497 3.503 12 O -0.551 6.551 13 O -0.517 6.517 14 C 0.473 3.527 15 O -0.629 6.629 16 C -0.204 4.204 17 C -0.129 4.129 18 C -0.149 4.149 19 H 0.276 0.724 20 H 0.122 0.878 21 H 0.120 0.880 22 H 0.414 0.586 23 H 0.118 0.882 24 H 0.087 0.913 25 H 0.142 0.858 26 H 0.129 0.871 27 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 -5.560 7.531 10.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.203 4.203 3 Si 0.818 3.182 4 H -0.210 1.210 5 H -0.187 1.187 6 H -0.191 1.191 7 C -0.473 4.473 8 H 0.095 0.905 9 N -0.160 5.160 10 C 0.019 3.981 11 C 0.339 3.661 12 O -0.441 6.441 13 O -0.329 6.329 14 C 0.264 3.736 15 O -0.516 6.516 16 C -0.225 4.225 17 C -0.166 4.166 18 C -0.186 4.186 19 H 0.086 0.914 20 H 0.140 0.860 21 H 0.138 0.862 22 H 0.273 0.727 23 H 0.136 0.864 24 H 0.106 0.894 25 H 0.160 0.840 26 H 0.148 0.852 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.948 -5.412 7.188 9.826 hybrid contribution -0.249 1.072 -1.102 1.557 sum -4.197 -4.341 6.087 8.573 Atomic orbital electron populations 1.69874 1.06830 1.28846 1.47642 1.26012 0.96225 1.02440 0.95608 0.84932 0.78431 0.76675 0.78182 1.21005 1.18713 1.19126 1.19639 0.97164 0.85471 1.45019 0.90510 1.43539 1.20838 1.05009 1.46593 1.20850 0.79938 1.05872 0.91399 1.23847 0.84325 0.69571 0.88325 1.90609 1.86508 1.47259 1.19674 1.84450 1.16660 1.85375 1.46406 1.20177 0.86320 0.84967 0.82153 1.90452 1.28663 1.87377 1.45121 1.22096 0.99402 0.91070 1.09961 1.23051 1.01697 0.99961 0.91891 1.22949 1.02475 0.94400 0.98780 0.91422 0.86041 0.86208 0.72674 0.86409 0.89418 0.84038 0.85250 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.94 9.26 21.66 0.20 -46.73 15 2 C 0.00 -0.08 4.89 84.93 0.42 0.34 15 3 Si 0.99 42.43 29.60 68.60 2.03 44.46 15 4 H -0.28 -12.35 7.11 99.48 0.71 -11.65 15 5 H -0.26 -10.33 7.11 99.48 0.71 -9.62 15 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 15 7 C -0.35 -19.98 9.35 84.04 0.79 -19.20 15 8 H 0.08 4.77 7.37 -2.91 -0.02 4.75 15 9 N -0.44 -23.27 2.18 -639.58 -1.39 -24.66 15 10 C 0.14 6.28 4.85 85.63 0.42 6.69 15 11 C 0.50 21.75 5.72 71.24 0.41 22.16 15 12 O -0.55 -29.29 16.80 21.98 0.37 -28.92 15 13 O -0.52 -17.31 13.42 -51.36 -0.69 -18.00 15 14 C 0.47 24.45 7.20 87.66 0.63 25.08 15 15 O -0.63 -37.68 15.90 -3.05 -0.05 -37.73 15 16 C -0.20 -7.70 4.81 -11.54 -0.06 -7.76 15 17 C -0.13 -3.59 10.23 30.59 0.31 -3.27 15 18 C -0.15 -4.68 10.04 30.60 0.31 -4.37 15 19 H 0.28 13.63 8.31 -92.71 -0.77 12.85 15 20 H 0.12 4.12 6.99 -2.39 -0.02 4.10 15 21 H 0.12 5.38 6.34 -2.39 -0.02 5.36 15 22 H 0.41 10.29 9.10 -74.06 -0.67 9.62 15 23 H 0.12 4.11 6.73 -2.39 -0.02 4.10 15 24 H 0.09 2.63 8.14 -2.39 -0.02 2.61 15 25 H 0.14 2.68 8.14 -2.39 -0.02 2.66 15 26 H 0.13 3.09 8.14 -2.39 -0.02 3.07 15 27 H 0.08 2.92 7.67 -2.39 -0.02 2.90 15 Total: -1.00 -75.89 242.51 4.22 -71.67 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.53 Total: 20.25 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 3.22 Total: 19.67 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -1.19 Total: -71.40 kcal Atomic # 8 Polarization: -84.28 SS G_CDS: -0.37 Total: -84.65 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -75.89 4.22 -71.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077156.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.542 kcal (2) G-P(sol) polarization free energy of solvation -75.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds