Wall clock time and date at job start Sun Mar 29 2020 22:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48497 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47080 * 299.99776 * 3 2 1 6 6 H 1.48506 * 109.47018 * 59.99875 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.50702 * 109.47419 * 60.27696 * 10 9 7 12 12 O 1.20819 * 120.00186 * 145.00310 * 11 10 9 13 13 O 1.34231 * 119.99553 * 324.99754 * 11 10 9 14 14 C 1.53004 * 109.47320 * 300.27691 * 10 9 7 15 15 C 1.53010 * 109.46843 * 299.99841 * 14 10 9 16 16 C 1.52996 * 109.47408 * 300.00063 * 15 14 10 17 17 C 1.52998 * 109.46992 * 59.99874 * 16 15 14 18 18 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 19 19 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 20 20 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 21 21 H 0.96696 * 117.00096 * 179.97438 * 13 11 10 22 22 H 1.08998 * 109.47212 * 59.99512 * 14 10 9 23 23 H 1.09000 * 109.47221 * 180.02562 * 14 10 9 24 24 H 1.09000 * 109.46764 * 179.97438 * 15 14 10 25 25 H 1.09005 * 109.46732 * 60.00009 * 15 14 10 26 26 H 1.09005 * 109.47125 * 300.00260 * 16 15 14 27 27 H 1.08998 * 109.47408 * 180.02562 * 16 15 14 28 28 H 1.09004 * 109.47239 * 180.02562 * 17 16 15 29 29 H 1.08996 * 109.47462 * 60.00191 * 17 16 15 30 30 H 1.08996 * 109.47100 * 179.97438 * 18 10 9 31 31 H 1.08995 * 109.46638 * 300.00121 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 6 2.9240 -3.7424 1.2253 12 8 3.1013 -4.8081 1.7662 13 8 3.4984 -2.6347 1.7200 14 6 2.9380 -3.7321 -1.2544 15 6 2.0587 -3.6453 -2.5036 16 6 1.0645 -4.8081 -2.5093 17 6 0.1845 -4.7328 -1.2600 18 6 1.0637 -4.8197 -0.0108 19 1 -0.4849 0.8401 0.0004 20 1 0.3555 -2.3881 -0.0002 21 1 4.0448 -2.7393 2.5109 22 1 3.6463 -2.9036 -1.2504 23 1 3.4827 -4.6763 -1.2588 24 1 2.6858 -3.6985 -3.3936 25 1 1.5138 -2.7013 -2.4994 26 1 1.6094 -5.7522 -2.5135 27 1 0.4384 -4.7465 -3.3994 28 1 -0.5236 -5.5615 -1.2638 29 1 -0.3605 -3.7889 -1.2558 30 1 1.6087 -5.7637 -0.0155 31 1 0.4368 -4.7660 0.8792 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739087491.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:29 Heat of formation + Delta-G solvation = -96.491646 kcal Electronic energy + Delta-G solvation = -15261.716381 eV Core-core repulsion = 12735.667507 eV Total energy + Delta-G solvation = -2526.048874 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.91419 -37.64677 -35.27371 -33.64296 -31.25964 -30.29871 -28.28699 -23.98244 -23.41523 -22.09145 -20.46499 -18.37289 -17.42252 -17.10736 -15.78636 -15.14648 -14.54062 -14.11927 -14.03539 -13.54848 -12.97798 -12.72321 -12.06930 -11.77013 -11.71558 -11.65742 -10.94206 -10.84387 -10.66498 -10.60389 -10.32024 -10.09181 -10.04238 -9.75805 -9.61362 -9.45050 -8.88230 -7.09985 -5.82557 -3.10899 3.02833 3.41231 3.48875 3.50842 3.94016 4.56045 5.20806 5.26916 5.34467 5.57649 5.59930 5.77784 5.90456 5.96316 6.04365 6.09348 6.15304 6.25046 6.46048 6.47838 6.63222 6.75295 6.79489 6.88807 7.10782 7.30106 7.81512 8.31821 8.77864 9.47677 9.93819 10.31958 11.39406 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028915 B = 0.013121 C = 0.010734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.120399 B = 2133.411144 C = 2607.941071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.224 4.224 8 H 0.084 0.916 9 N -0.695 5.695 10 C 0.213 3.787 11 C 0.470 3.530 12 O -0.556 6.556 13 O -0.483 6.483 14 C -0.116 4.116 15 C -0.109 4.109 16 C -0.115 4.115 17 C -0.116 4.116 18 C -0.105 4.105 19 H 0.255 0.745 20 H 0.390 0.610 21 H 0.376 0.624 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.085 0.915 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.207 -7.325 -2.707 8.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.355 4.355 8 H 0.101 0.899 9 N -0.336 5.336 10 C 0.117 3.883 11 C 0.311 3.689 12 O -0.447 6.447 13 O -0.290 6.290 14 C -0.156 4.156 15 C -0.146 4.146 16 C -0.153 4.153 17 C -0.153 4.153 18 C -0.143 4.143 19 H 0.065 0.935 20 H 0.226 0.774 21 H 0.232 0.768 22 H 0.089 0.911 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.105 -7.379 -2.916 8.520 hybrid contribution 0.548 0.907 0.754 1.300 sum 3.652 -6.472 -2.162 7.740 Atomic orbital electron populations 1.69678 1.05160 1.25734 1.57328 1.24767 0.95443 0.97777 1.02628 0.86101 0.78999 0.83946 0.77026 1.20381 1.22011 1.21998 1.19351 0.91567 0.83143 1.41419 0.89855 1.42571 1.05833 0.98958 1.86286 1.19516 0.90509 0.89488 0.88746 1.25932 0.76349 0.80322 0.86273 1.90568 1.61387 1.31186 1.61597 1.85099 1.60682 1.38352 1.44820 1.21876 0.98158 1.00760 0.94824 1.21385 0.97349 0.99974 0.95908 1.21510 0.97804 0.98468 0.97494 1.21508 0.97547 1.02299 0.93958 1.21557 0.97124 0.97074 0.98525 0.93500 0.77374 0.76802 0.91130 0.93177 0.93087 0.89650 0.92887 0.92558 0.92513 0.90610 0.91018 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.84 13.06 55.49 0.72 -26.12 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 7 C -0.22 -5.81 7.86 -15.06 -0.12 -5.92 16 8 H 0.08 2.16 6.18 -52.49 -0.32 1.83 16 9 N -0.69 -16.31 4.07 -48.30 -0.20 -16.50 16 10 C 0.21 4.27 0.71 -132.97 -0.09 4.17 16 11 C 0.47 9.81 7.18 36.01 0.26 10.07 16 12 O -0.56 -12.10 16.85 -18.74 -0.32 -12.42 16 13 O -0.48 -9.66 10.76 -39.26 -0.42 -10.08 16 14 C -0.12 -2.12 4.54 -26.72 -0.12 -2.24 16 15 C -0.11 -1.82 5.77 -26.73 -0.15 -1.98 16 16 C -0.12 -1.70 5.92 -26.73 -0.16 -1.86 16 17 C -0.12 -1.83 5.75 -26.73 -0.15 -1.98 16 18 C -0.10 -1.85 4.31 -26.73 -0.12 -1.97 16 19 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 20 H 0.39 9.74 6.51 -40.82 -0.27 9.47 16 21 H 0.38 5.62 9.10 45.56 0.41 6.03 16 22 H 0.07 1.37 7.26 -51.93 -0.38 0.99 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 1.69 7.60 -51.93 -0.39 1.29 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.35 6.86 -51.93 -0.36 0.99 16 30 H 0.07 1.21 7.87 -51.93 -0.41 0.80 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 251.71 15.07 3.79 3.79 Total: -1.00 -29.88 251.71 -5.58 -35.46 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -3.38 Total: 11.11 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -0.75 Total: -2.08 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.53 Total: -42.62 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.74 Total: -22.50 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.88 -5.58 -35.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087491.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.035 kcal (2) G-P(sol) polarization free energy of solvation -29.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds