Wall clock time and date at job start Sun Mar 29 2020 22:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48497 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47080 * 299.99776 * 3 2 1 6 6 H 1.48506 * 109.47018 * 59.99875 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.50702 * 109.47419 * 60.27696 * 10 9 7 12 12 O 1.20819 * 120.00186 * 145.00310 * 11 10 9 13 13 O 1.34231 * 119.99553 * 324.99754 * 11 10 9 14 14 C 1.53004 * 109.47320 * 300.27691 * 10 9 7 15 15 C 1.53010 * 109.46843 * 299.99841 * 14 10 9 16 16 C 1.52996 * 109.47408 * 300.00063 * 15 14 10 17 17 C 1.52998 * 109.46992 * 59.99874 * 16 15 14 18 18 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 19 19 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 20 20 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 21 21 H 0.96696 * 117.00096 * 179.97438 * 13 11 10 22 22 H 1.08998 * 109.47212 * 59.99512 * 14 10 9 23 23 H 1.09000 * 109.47221 * 180.02562 * 14 10 9 24 24 H 1.09000 * 109.46764 * 179.97438 * 15 14 10 25 25 H 1.09005 * 109.46732 * 60.00009 * 15 14 10 26 26 H 1.09005 * 109.47125 * 300.00260 * 16 15 14 27 27 H 1.08998 * 109.47408 * 180.02562 * 16 15 14 28 28 H 1.09004 * 109.47239 * 180.02562 * 17 16 15 29 29 H 1.08996 * 109.47462 * 60.00191 * 17 16 15 30 30 H 1.08996 * 109.47100 * 179.97438 * 18 10 9 31 31 H 1.08995 * 109.46638 * 300.00121 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 6 2.9240 -3.7424 1.2253 12 8 3.1013 -4.8081 1.7662 13 8 3.4984 -2.6347 1.7200 14 6 2.9380 -3.7321 -1.2544 15 6 2.0587 -3.6453 -2.5036 16 6 1.0645 -4.8081 -2.5093 17 6 0.1845 -4.7328 -1.2600 18 6 1.0637 -4.8197 -0.0108 19 1 -0.4849 0.8401 0.0004 20 1 0.3555 -2.3881 -0.0002 21 1 4.0448 -2.7393 2.5109 22 1 3.6463 -2.9036 -1.2504 23 1 3.4827 -4.6763 -1.2588 24 1 2.6858 -3.6985 -3.3936 25 1 1.5138 -2.7013 -2.4994 26 1 1.6094 -5.7522 -2.5135 27 1 0.4384 -4.7465 -3.3994 28 1 -0.5236 -5.5615 -1.2638 29 1 -0.3605 -3.7889 -1.2558 30 1 1.6087 -5.7637 -0.0155 31 1 0.4368 -4.7660 0.8792 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739087491.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:29 Heat of formation + Delta-G solvation = -116.418372 kcal Electronic energy + Delta-G solvation = -15262.580468 eV Core-core repulsion = 12735.667507 eV Total energy + Delta-G solvation = -2526.912962 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.53204 -39.16401 -36.94451 -35.41186 -33.01879 -31.67957 -30.01022 -25.78470 -25.09102 -23.49513 -21.91608 -19.90546 -19.25333 -18.83560 -17.41429 -16.81204 -16.22207 -15.85583 -15.58403 -15.08346 -14.56345 -14.30250 -13.56538 -13.39013 -13.17912 -13.04336 -12.85282 -12.60029 -12.31697 -12.09914 -11.98676 -11.78794 -11.68265 -11.34330 -11.17288 -10.90398 -10.74035 -9.04644 -7.88461 -5.16352 1.35486 1.50602 1.52267 1.61186 2.40732 2.61160 3.53650 3.70985 3.85188 3.95983 4.17274 4.39609 4.46910 4.59793 4.67561 4.70359 4.79890 4.90482 5.10476 5.14851 5.33934 5.42062 5.43223 5.50141 5.70751 5.72369 5.78529 6.30070 7.20801 7.41678 8.02239 8.31405 9.34603 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028915 B = 0.013121 C = 0.010734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.120399 B = 2133.411144 C = 2607.941071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.071 4.071 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.297 1.297 6 H -0.301 1.301 7 C -0.205 4.205 8 H 0.084 0.916 9 N -0.703 5.703 10 C 0.204 3.796 11 C 0.470 3.530 12 O -0.565 6.565 13 O -0.495 6.495 14 C -0.113 4.113 15 C -0.106 4.106 16 C -0.110 4.110 17 C -0.112 4.112 18 C -0.101 4.101 19 H 0.248 0.752 20 H 0.381 0.619 21 H 0.400 0.600 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.214 -8.715 -3.308 10.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.263 4.263 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.225 1.225 6 H -0.228 1.228 7 C -0.336 4.336 8 H 0.102 0.898 9 N -0.344 5.344 10 C 0.110 3.890 11 C 0.312 3.688 12 O -0.457 6.457 13 O -0.304 6.304 14 C -0.152 4.152 15 C -0.143 4.143 16 C -0.148 4.148 17 C -0.149 4.149 18 C -0.139 4.139 19 H 0.057 0.943 20 H 0.215 0.785 21 H 0.259 0.741 22 H 0.072 0.928 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.164 -8.799 -3.508 10.348 hybrid contribution 0.327 1.231 0.992 1.614 sum 4.492 -7.568 -2.516 9.153 Atomic orbital electron populations 1.69809 1.06379 1.25671 1.60086 1.25405 0.96127 1.00516 1.04235 0.85217 0.78508 0.80707 0.76204 1.19145 1.22473 1.22833 1.19532 0.91571 0.83972 1.38564 0.89825 1.42611 1.05440 0.99691 1.86612 1.19875 0.91209 0.88888 0.89042 1.25794 0.76467 0.80270 0.86259 1.90564 1.61895 1.31409 1.61823 1.84989 1.61095 1.38137 1.46213 1.21846 0.97801 1.01200 0.94357 1.21344 0.97644 0.99244 0.96093 1.21502 0.97432 0.98380 0.97448 1.21485 0.97749 1.02011 0.93685 1.21569 0.96764 0.96449 0.99108 0.94286 0.78487 0.74070 0.92820 0.90941 0.90870 0.93289 0.90581 0.90927 0.89776 0.93276 0.89566 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.09 13.06 21.65 0.28 -56.81 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.96 45.36 29.55 68.60 2.03 47.39 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 7 C -0.20 -10.61 7.86 84.03 0.66 -9.95 16 8 H 0.08 4.28 6.18 -2.91 -0.02 4.26 16 9 N -0.70 -33.05 4.07 -306.73 -1.25 -34.30 16 10 C 0.20 7.92 0.71 2.86 0.00 7.92 16 11 C 0.47 18.92 7.18 71.24 0.51 19.43 16 12 O -0.57 -23.46 16.85 21.98 0.37 -23.09 16 13 O -0.49 -19.10 10.76 -51.43 -0.55 -19.65 16 14 C -0.11 -3.88 4.54 30.60 0.14 -3.74 16 15 C -0.11 -3.34 5.77 30.60 0.18 -3.16 16 16 C -0.11 -2.90 5.92 30.59 0.18 -2.72 16 17 C -0.11 -3.30 5.75 30.60 0.18 -3.13 16 18 C -0.10 -3.39 4.31 30.60 0.13 -3.25 16 19 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 20 H 0.38 19.37 6.51 -92.71 -0.60 18.76 16 21 H 0.40 11.21 9.10 -74.06 -0.67 10.54 16 22 H 0.05 2.01 7.26 -2.39 -0.02 1.99 16 23 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.05 1.91 7.60 -2.38 -0.02 1.90 16 26 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.08 2.03 8.14 -2.38 -0.02 2.02 16 29 H 0.05 1.73 6.86 -2.39 -0.02 1.71 16 30 H 0.09 2.65 7.87 -2.39 -0.02 2.63 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -63.23 251.71 3.19 -60.04 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: -0.13 Total: 28.49 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 2.44 Total: -2.06 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -0.96 Total: -91.11 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -0.18 Total: -42.75 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -63.23 3.19 -60.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087491.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.378 kcal (2) G-P(sol) polarization free energy of solvation -63.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds