Wall clock time and date at job start Sun Mar 29 2020 21:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99927 * 2 1 4 4 H 1.48501 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47153 * 300.00031 * 3 2 1 6 6 H 1.48500 * 109.47101 * 60.00101 * 3 2 1 7 7 C 1.38814 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99906 * 202.19122 * 7 2 1 9 9 N 1.36940 * 119.99838 * 22.19435 * 7 2 1 10 10 C 1.46496 * 119.99840 * 16.14811 * 9 7 2 11 11 C 1.50700 * 109.47323 * 264.01029 * 10 9 7 12 12 O 1.20830 * 119.99954 * 0.02562 * 11 10 9 13 13 O 1.34231 * 120.00268 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99821 * 196.14745 * 9 7 2 15 15 C 1.52999 * 109.47152 * 270.00065 * 14 9 7 16 16 C 1.53787 * 113.61439 * 85.86343 * 15 14 9 17 17 C 1.54058 * 86.98310 * 140.01898 * 16 15 14 18 18 C 1.53784 * 113.61482 * 183.47381 * 15 14 9 19 19 H 0.96997 * 120.00161 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47560 * 24.01134 * 10 9 7 21 21 H 1.09007 * 109.46944 * 144.01627 * 10 9 7 22 22 H 0.96697 * 116.99679 * 180.02562 * 13 11 10 23 23 H 1.09001 * 109.46771 * 150.00047 * 14 9 7 24 24 H 1.09000 * 109.47187 * 30.00421 * 14 9 7 25 25 H 1.09003 * 112.84931 * 314.67046 * 15 14 9 26 26 H 1.08998 * 113.61173 * 254.61171 * 16 15 14 27 27 H 1.08998 * 113.61042 * 25.51865 * 16 15 14 28 28 H 1.08996 * 113.61632 * 220.02420 * 17 16 15 29 29 H 1.08996 * 113.60831 * 89.11384 * 17 16 15 30 30 H 1.08999 * 113.61450 * 334.48099 * 18 15 14 31 31 H 1.08992 * 113.61403 * 105.30221 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0303 -1.2366 0.3538 9 7 1.4017 -2.3443 -0.4469 10 6 0.1753 -2.2570 -1.2435 11 6 -1.0215 -2.4269 -0.3435 12 8 -0.8659 -2.6026 0.8418 13 8 -2.2603 -2.3832 -0.8586 14 6 1.9770 -3.6536 -0.1291 15 6 2.9651 -4.0562 -1.2256 16 6 4.3838 -3.5030 -1.0099 17 6 4.9028 -4.8671 -1.5031 18 6 3.5645 -5.4589 -1.0300 19 1 -0.4850 0.8400 0.0004 20 1 0.1275 -1.2835 -1.7315 21 1 0.1761 -3.0426 -1.9991 22 1 -2.9963 -2.4970 -0.2419 23 1 1.1805 -4.3952 -0.0676 24 1 2.4975 -3.5993 0.8270 25 1 2.5770 -3.8834 -2.2294 26 1 4.6342 -2.6738 -1.6715 27 1 4.6184 -3.2983 0.0346 28 1 5.7641 -5.2342 -0.9451 29 1 5.0443 -4.9159 -2.5827 30 1 3.5757 -5.7879 0.0091 31 1 3.1532 -6.2077 -1.7067 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066688.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:25 Heat of formation + Delta-G solvation = -53.186220 kcal Electronic energy + Delta-G solvation = -14821.478916 eV Core-core repulsion = 12297.307907 eV Total energy + Delta-G solvation = -2524.171010 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.78126 -38.21737 -35.35819 -34.26980 -31.31444 -28.14875 -26.63097 -25.04903 -23.47295 -21.43129 -19.92564 -18.78546 -16.81466 -16.57900 -15.41050 -15.11100 -14.76503 -14.09371 -14.04967 -13.47335 -13.36081 -12.24261 -11.97978 -11.71982 -11.47657 -11.25987 -11.02322 -10.69037 -10.61395 -10.23804 -10.12918 -10.03921 -9.94463 -9.71423 -9.51843 -9.09754 -8.50142 -6.96677 -5.87895 -3.19102 3.37030 3.45124 3.47594 3.93187 4.36812 4.59732 5.07937 5.13233 5.22583 5.33111 5.42455 5.66746 5.97365 6.10950 6.19642 6.21029 6.33146 6.40503 6.48102 6.59432 6.76562 6.84473 7.01122 7.06582 7.15201 7.75370 7.89036 8.24744 9.07908 9.47083 9.77510 10.20923 11.23624 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.022698 B = 0.013262 C = 0.008946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.287190 B = 2110.740943 C = 3129.116271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.004 4.004 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.567 5.567 10 C 0.190 3.810 11 C 0.476 3.524 12 O -0.518 6.518 13 O -0.545 6.545 14 C 0.157 3.843 15 C -0.121 4.121 16 C -0.123 4.123 17 C -0.146 4.146 18 C -0.139 4.139 19 H 0.255 0.745 20 H 0.113 0.887 21 H 0.050 0.950 22 H 0.379 0.621 23 H 0.036 0.964 24 H 0.050 0.950 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.312 -7.163 -4.302 8.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.201 4.201 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.220 1.220 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.286 5.286 10 C 0.060 3.940 11 C 0.316 3.684 12 O -0.404 6.404 13 O -0.355 6.355 14 C 0.031 3.969 15 C -0.142 4.142 16 C -0.161 4.161 17 C -0.183 4.183 18 C -0.178 4.178 19 H 0.066 0.934 20 H 0.130 0.870 21 H 0.068 0.932 22 H 0.235 0.765 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.628 -7.011 -4.216 8.949 hybrid contribution -0.270 0.989 0.656 1.217 sum 3.358 -6.021 -3.560 7.759 Atomic orbital electron populations 1.69877 1.05258 1.25598 1.54488 1.24838 0.95216 0.98516 1.01555 0.86147 0.79310 0.83707 0.77192 1.20239 1.21547 1.21981 1.19323 0.95319 0.84861 1.37957 0.90204 1.43976 1.23468 1.01826 1.59358 1.20247 0.81329 1.02234 0.90216 1.25455 0.83116 0.69841 0.89984 1.90501 1.85872 1.45849 1.18151 1.84645 1.17843 1.86447 1.46566 1.20827 0.94195 0.86973 0.94910 1.23122 0.95981 0.93960 1.01133 1.22843 0.96422 0.95711 1.01105 1.22893 0.96867 0.98309 1.00270 1.22915 0.96780 0.97191 1.00873 0.93437 0.86962 0.93206 0.76537 0.94557 0.93115 0.89946 0.91880 0.90615 0.92432 0.90941 0.90626 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.03 9.31 55.49 0.52 -25.52 16 2 C 0.00 -0.11 4.86 -17.43 -0.08 -0.19 16 3 Si 0.91 21.67 29.61 -169.99 -5.03 16.64 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.25 -6.57 9.66 -15.06 -0.15 -6.72 16 8 H 0.08 2.10 7.92 -52.49 -0.42 1.68 16 9 N -0.57 -13.86 2.03 -174.61 -0.35 -14.22 16 10 C 0.19 4.47 5.49 -5.20 -0.03 4.44 16 11 C 0.48 11.70 6.55 36.01 0.24 11.93 16 12 O -0.52 -14.52 16.90 -18.75 -0.32 -14.83 16 13 O -0.54 -11.32 13.42 -39.26 -0.53 -11.84 16 14 C 0.16 3.27 5.46 -4.04 -0.02 3.25 16 15 C -0.12 -2.08 3.96 -89.80 -0.36 -2.43 16 16 C -0.12 -2.01 7.65 -25.77 -0.20 -2.20 16 17 C -0.15 -1.96 8.09 -25.77 -0.21 -2.17 16 18 C -0.14 -1.97 7.64 -25.92 -0.20 -2.16 16 19 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 20 H 0.11 2.86 6.35 -51.93 -0.33 2.53 16 21 H 0.05 1.01 8.12 -51.92 -0.42 0.59 16 22 H 0.38 6.30 9.10 45.56 0.41 6.71 16 23 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 24 H 0.05 1.09 7.77 -51.93 -0.40 0.69 16 25 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.08 1.27 7.92 -51.93 -0.41 0.86 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 264.32 15.07 3.98 3.98 Total: -1.00 -31.38 264.32 -6.39 -37.77 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -3.66 Total: 4.27 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -1.00 Total: 3.75 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.16 Total: -39.74 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.84 Total: -26.68 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.38 -6.39 -37.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066688.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.417 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds