Wall clock time and date at job start Sun Mar 29 2020 21:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99927 * 2 1 4 4 H 1.48501 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47153 * 300.00031 * 3 2 1 6 6 H 1.48500 * 109.47101 * 60.00101 * 3 2 1 7 7 C 1.38814 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99906 * 202.19122 * 7 2 1 9 9 N 1.36940 * 119.99838 * 22.19435 * 7 2 1 10 10 C 1.46496 * 119.99840 * 16.14811 * 9 7 2 11 11 C 1.50700 * 109.47323 * 264.01029 * 10 9 7 12 12 O 1.20830 * 119.99954 * 0.02562 * 11 10 9 13 13 O 1.34231 * 120.00268 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99821 * 196.14745 * 9 7 2 15 15 C 1.52999 * 109.47152 * 270.00065 * 14 9 7 16 16 C 1.53787 * 113.61439 * 85.86343 * 15 14 9 17 17 C 1.54058 * 86.98310 * 140.01898 * 16 15 14 18 18 C 1.53784 * 113.61482 * 183.47381 * 15 14 9 19 19 H 0.96997 * 120.00161 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47560 * 24.01134 * 10 9 7 21 21 H 1.09007 * 109.46944 * 144.01627 * 10 9 7 22 22 H 0.96697 * 116.99679 * 180.02562 * 13 11 10 23 23 H 1.09001 * 109.46771 * 150.00047 * 14 9 7 24 24 H 1.09000 * 109.47187 * 30.00421 * 14 9 7 25 25 H 1.09003 * 112.84931 * 314.67046 * 15 14 9 26 26 H 1.08998 * 113.61173 * 254.61171 * 16 15 14 27 27 H 1.08998 * 113.61042 * 25.51865 * 16 15 14 28 28 H 1.08996 * 113.61632 * 220.02420 * 17 16 15 29 29 H 1.08996 * 113.60831 * 89.11384 * 17 16 15 30 30 H 1.08999 * 113.61450 * 334.48099 * 18 15 14 31 31 H 1.08992 * 113.61403 * 105.30221 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0303 -1.2366 0.3538 9 7 1.4017 -2.3443 -0.4469 10 6 0.1753 -2.2570 -1.2435 11 6 -1.0215 -2.4269 -0.3435 12 8 -0.8659 -2.6026 0.8418 13 8 -2.2603 -2.3832 -0.8586 14 6 1.9770 -3.6536 -0.1291 15 6 2.9651 -4.0562 -1.2256 16 6 4.3838 -3.5030 -1.0099 17 6 4.9028 -4.8671 -1.5031 18 6 3.5645 -5.4589 -1.0300 19 1 -0.4850 0.8400 0.0004 20 1 0.1275 -1.2835 -1.7315 21 1 0.1761 -3.0426 -1.9991 22 1 -2.9963 -2.4970 -0.2419 23 1 1.1805 -4.3952 -0.0676 24 1 2.4975 -3.5993 0.8270 25 1 2.5770 -3.8834 -2.2294 26 1 4.6342 -2.6738 -1.6715 27 1 4.6184 -3.2983 0.0346 28 1 5.7641 -5.2342 -0.9451 29 1 5.0443 -4.9159 -2.5827 30 1 3.5757 -5.7879 0.0091 31 1 3.1532 -6.2077 -1.7067 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066688.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:24 Heat of formation + Delta-G solvation = -72.752355 kcal Electronic energy + Delta-G solvation = -14822.327368 eV Core-core repulsion = 12297.307907 eV Total energy + Delta-G solvation = -2525.019461 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.61339 -39.61305 -37.14749 -36.19023 -33.27932 -29.86641 -28.48072 -26.26944 -25.17990 -23.08757 -21.73765 -20.07729 -18.76751 -18.46239 -17.19716 -16.94465 -16.19874 -16.00254 -15.42018 -15.29405 -15.17287 -13.85694 -13.50497 -13.19663 -13.13531 -12.97202 -12.73324 -12.46592 -12.23838 -12.07072 -11.97791 -11.79648 -11.50565 -11.18901 -10.91573 -10.85799 -10.51228 -8.90379 -7.93959 -5.25789 1.46610 1.49493 1.59513 2.00119 2.49150 2.77883 3.26606 3.54913 3.93789 4.04637 4.05494 4.21396 4.61606 4.71869 4.78003 4.95016 5.00592 5.02360 5.10693 5.16562 5.22683 5.29725 5.37063 5.57486 5.65788 5.79944 6.12842 6.25652 7.05671 7.59937 7.83201 8.21082 9.15625 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.022698 B = 0.013262 C = 0.008946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.287190 B = 2110.740943 C = 3129.116271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.056 4.056 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.303 1.303 7 C -0.247 4.247 8 H 0.079 0.921 9 N -0.581 5.581 10 C 0.188 3.812 11 C 0.480 3.520 12 O -0.560 6.560 13 O -0.534 6.534 14 C 0.158 3.842 15 C -0.123 4.123 16 C -0.132 4.132 17 C -0.129 4.129 18 C -0.129 4.129 19 H 0.248 0.752 20 H 0.093 0.907 21 H 0.085 0.915 22 H 0.400 0.600 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.251 -8.139 -5.269 10.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.250 4.250 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.231 1.231 7 C -0.377 4.377 8 H 0.096 0.904 9 N -0.301 5.301 10 C 0.058 3.942 11 C 0.322 3.678 12 O -0.449 6.449 13 O -0.345 6.345 14 C 0.033 3.967 15 C -0.143 4.143 16 C -0.169 4.169 17 C -0.166 4.166 18 C -0.167 4.167 19 H 0.058 0.942 20 H 0.111 0.889 21 H 0.103 0.897 22 H 0.258 0.742 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.569 -8.018 -5.207 10.596 hybrid contribution -0.626 1.241 0.966 1.693 sum 3.943 -6.776 -4.241 8.914 Atomic orbital electron populations 1.70019 1.06380 1.25519 1.56241 1.25527 0.95948 1.01243 1.02277 0.85193 0.78701 0.80003 0.76426 1.19075 1.21381 1.23105 1.19565 0.95347 0.85928 1.36815 0.90357 1.44190 1.23905 1.02510 1.59474 1.20297 0.80921 1.02371 0.90596 1.25584 0.84232 0.68633 0.89360 1.90481 1.86681 1.47962 1.19791 1.84564 1.17536 1.85674 1.46732 1.20944 0.94638 0.85432 0.95680 1.23031 0.95199 0.96626 0.99464 1.22860 0.96378 0.97255 1.00426 1.22824 0.97039 0.95454 1.01307 1.22876 0.96579 0.95634 1.01633 0.94241 0.88911 0.89689 0.74158 0.94688 0.94682 0.90010 0.92889 0.91752 0.90762 0.89466 0.90391 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.22 9.31 21.65 0.20 -54.02 16 2 C -0.06 -3.07 4.86 84.86 0.41 -2.66 16 3 Si 0.97 44.94 29.61 68.60 2.03 46.97 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 7 C -0.25 -13.25 9.66 84.03 0.81 -12.44 16 8 H 0.08 4.13 7.92 -2.91 -0.02 4.11 16 9 N -0.58 -28.36 2.03 -706.34 -1.43 -29.79 16 10 C 0.19 8.77 5.49 85.63 0.47 9.24 16 11 C 0.48 23.41 6.55 71.24 0.47 23.87 16 12 O -0.56 -31.56 16.90 21.95 0.37 -31.19 16 13 O -0.53 -21.51 13.42 -51.43 -0.69 -22.20 16 14 C 0.16 6.51 5.46 86.38 0.47 6.98 16 15 C -0.12 -4.00 3.96 -10.26 -0.04 -4.04 16 16 C -0.13 -4.09 7.65 31.22 0.24 -3.85 16 17 C -0.13 -3.04 8.09 31.22 0.25 -2.79 16 18 C -0.13 -3.26 7.64 31.12 0.24 -3.02 16 19 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 20 H 0.09 4.73 6.35 -2.39 -0.02 4.72 16 21 H 0.09 3.30 8.12 -2.38 -0.02 3.29 16 22 H 0.40 12.69 9.10 -74.06 -0.67 12.02 16 23 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 24 H 0.03 1.52 7.77 -2.39 -0.02 1.50 16 25 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 2.12 7.92 -2.39 -0.02 2.10 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 1.94 8.10 -2.39 -0.02 1.92 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -66.59 264.32 4.24 -62.34 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.45 Total: 16.58 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 3.32 Total: 11.30 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -1.23 Total: -83.81 kcal Atomic # 8 Polarization: -53.06 SS G_CDS: -0.32 Total: -53.38 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -66.59 4.24 -62.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066688.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.411 kcal (2) G-P(sol) polarization free energy of solvation -66.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds