Wall clock time and date at job start Sun Mar 29 2020 21:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00281 * 2 1 4 4 H 1.48503 * 109.47150 * 265.09759 * 3 2 1 5 5 H 1.48497 * 109.47018 * 25.09278 * 3 2 1 6 6 H 1.48491 * 109.47226 * 145.09411 * 3 2 1 7 7 C 1.38818 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99537 * 204.60547 * 7 2 1 9 9 N 1.36932 * 120.00031 * 24.60262 * 7 2 1 10 10 C 1.46499 * 120.00023 * 189.45248 * 9 7 2 11 11 C 1.52995 * 109.47080 * 90.00407 * 10 9 7 12 12 C 1.53005 * 109.47161 * 180.02562 * 11 10 9 13 13 C 1.52999 * 117.49947 * 243.74483 * 12 11 10 14 14 C 1.52997 * 117.49781 * 175.08564 * 12 11 10 15 15 C 1.46499 * 119.99987 * 9.46014 * 9 7 2 16 16 C 1.50703 * 109.46860 * 269.28663 * 15 9 7 17 17 O 1.20829 * 119.99964 * 359.97438 * 16 15 9 18 18 O 1.34225 * 120.00040 * 180.02562 * 16 15 9 19 19 H 0.97007 * 119.99909 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.46952 * 330.00468 * 10 9 7 21 21 H 1.08997 * 109.47141 * 210.00510 * 10 9 7 22 22 H 1.09005 * 109.47080 * 299.99840 * 11 10 9 23 23 H 1.08996 * 109.47341 * 59.99863 * 11 10 9 24 24 H 1.09001 * 115.54571 * 29.41883 * 12 11 10 25 25 H 1.09005 * 117.49301 * 0.02562 * 13 12 11 26 26 H 1.08998 * 117.49626 * 145.01857 * 13 12 11 27 27 H 1.09002 * 117.49963 * 214.97867 * 14 12 11 28 28 H 1.09007 * 117.50269 * 0.02562 * 14 12 11 29 29 H 1.09004 * 109.47599 * 29.28304 * 15 9 7 30 30 H 1.09005 * 109.47144 * 149.28710 * 15 9 7 31 31 H 0.96701 * 117.00213 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6014 1.9865 -1.3950 5 1 1.3997 2.6803 0.5937 6 1 3.4920 1.4722 0.8011 7 6 2.0102 -1.2022 -0.0005 8 1 3.0167 -1.2448 0.3889 9 7 1.4187 -2.3340 -0.4947 10 6 2.0618 -3.6372 -0.3095 11 6 1.5768 -4.2638 0.9993 12 6 2.2489 -5.6246 1.1931 13 6 1.3489 -6.8619 1.2042 14 6 1.9819 -6.3637 2.5058 15 6 0.1430 -2.2417 -1.2089 16 6 -0.9927 -2.3978 -0.2306 17 8 -0.7602 -2.5690 0.9426 18 8 -2.2625 -2.3475 -0.6628 19 1 -0.4850 0.8401 -0.0004 20 1 3.1433 -3.5065 -0.2708 21 1 1.8045 -4.2911 -1.1427 22 1 1.8342 -3.6099 1.8325 23 1 0.4954 -4.3945 0.9607 24 1 3.2397 -5.7268 0.7505 25 1 0.2780 -6.7064 1.0729 26 1 1.7478 -7.7782 0.7691 27 1 2.7969 -6.9527 2.9266 28 1 1.3271 -5.8808 3.2313 29 1 0.0699 -1.2705 -1.6984 30 1 0.0881 -3.0313 -1.9583 31 1 -2.9570 -2.4523 0.0019 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833067364.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:10 Heat of formation + Delta-G solvation = -47.950074 kcal Electronic energy + Delta-G solvation = -14776.858377 eV Core-core repulsion = 12252.914424 eV Total energy + Delta-G solvation = -2523.943953 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.66939 -37.27244 -35.58362 -34.27250 -31.73830 -29.28641 -26.98170 -24.09051 -22.09262 -21.47291 -20.00958 -19.70514 -16.82622 -16.56974 -15.31002 -15.27234 -14.81995 -14.11358 -13.83903 -13.67352 -13.15097 -12.42628 -11.98478 -11.43637 -11.36283 -11.23055 -11.08151 -10.66995 -10.63530 -10.40125 -10.12432 -10.07619 -9.83484 -9.71627 -9.25858 -9.02305 -8.49424 -7.07986 -5.90999 -3.17084 3.38139 3.44903 3.46456 3.98881 4.17028 4.39051 4.62721 5.05535 5.29829 5.32285 5.32906 5.51644 5.86457 5.90997 6.11871 6.21329 6.36650 6.38018 6.40433 6.57966 6.67657 6.98864 7.02839 7.10896 7.33782 7.72548 7.94907 8.20222 9.05770 9.51891 9.76445 10.16916 11.20956 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029679 B = 0.010695 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.214108 B = 2617.507171 C = 3227.829444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.004 4.004 3 Si 0.909 3.091 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.248 4.248 8 H 0.082 0.918 9 N -0.572 5.572 10 C 0.149 3.851 11 C -0.107 4.107 12 C -0.143 4.143 13 C -0.186 4.186 14 C -0.188 4.188 15 C 0.189 3.811 16 C 0.478 3.522 17 O -0.514 6.514 18 O -0.546 6.546 19 H 0.257 0.743 20 H 0.051 0.949 21 H 0.040 0.960 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.051 0.949 31 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.733 -8.414 -1.449 8.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.201 4.201 3 Si 0.739 3.261 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.377 4.377 8 H 0.100 0.900 9 N -0.291 5.291 10 C 0.023 3.977 11 C -0.147 4.147 12 C -0.162 4.162 13 C -0.223 4.223 14 C -0.225 4.225 15 C 0.059 3.941 16 C 0.318 3.682 17 O -0.400 6.400 18 O -0.356 6.356 19 H 0.067 0.933 20 H 0.070 0.930 21 H 0.059 0.941 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.116 0.884 25 H 0.108 0.892 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.130 0.870 30 H 0.069 0.931 31 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.064 -8.256 -1.415 8.444 hybrid contribution -0.265 0.883 0.884 1.278 sum 0.799 -7.373 -0.531 7.435 Atomic orbital electron populations 1.69830 1.05250 1.25772 1.54351 1.24758 0.95231 0.98464 1.01615 0.86173 0.78980 0.83185 0.77725 1.21371 1.21989 1.20619 1.19330 0.96779 0.85193 1.36381 0.90039 1.44266 1.19004 1.02781 1.63053 1.20954 0.96452 0.86087 0.94192 1.21912 1.00091 0.91822 1.00880 1.22518 0.99693 0.93975 0.99980 1.22983 0.99225 0.98290 1.01833 1.22916 1.03387 1.04640 0.91536 1.20401 0.81179 1.02200 0.90312 1.25351 0.81992 0.69776 0.91129 1.90486 1.84179 1.45823 1.19540 1.84646 1.18446 1.86624 1.45884 0.93284 0.93049 0.94126 0.91664 0.91642 0.88439 0.89219 0.89610 0.89590 0.89115 0.86955 0.93144 0.76689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.77 9.00 55.49 0.50 -25.27 16 2 C 0.00 -0.10 4.89 -17.43 -0.09 -0.18 16 3 Si 0.91 21.67 29.62 -169.99 -5.03 16.63 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.67 9.70 -15.06 -0.15 -6.82 16 8 H 0.08 2.15 7.92 -52.48 -0.42 1.74 16 9 N -0.57 -13.99 2.09 -174.61 -0.37 -14.35 16 10 C 0.15 3.06 5.67 -4.04 -0.02 3.03 16 11 C -0.11 -2.16 5.07 -26.73 -0.14 -2.29 16 12 C -0.14 -2.29 5.73 -90.62 -0.52 -2.81 16 13 C -0.19 -2.66 10.18 -26.69 -0.27 -2.93 16 14 C -0.19 -2.73 10.25 -26.70 -0.27 -3.01 16 15 C 0.19 4.44 5.58 -5.19 -0.03 4.41 16 16 C 0.48 11.60 6.31 36.01 0.23 11.83 16 17 O -0.51 -13.98 14.42 -18.75 -0.27 -14.25 16 18 O -0.55 -11.36 13.42 -39.24 -0.53 -11.88 16 19 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 20 H 0.05 1.01 8.03 -51.93 -0.42 0.59 16 21 H 0.04 0.75 7.90 -51.93 -0.41 0.34 16 22 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 23 H 0.06 1.45 6.04 -51.93 -0.31 1.14 16 24 H 0.10 1.43 8.08 -51.93 -0.42 1.02 16 25 H 0.09 1.33 8.03 -51.93 -0.42 0.92 16 26 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.09 1.39 8.14 -51.92 -0.42 0.97 16 29 H 0.11 2.85 6.30 -51.93 -0.33 2.53 16 30 H 0.05 1.02 7.90 -51.93 -0.41 0.61 16 31 H 0.38 6.34 9.10 45.56 0.41 6.75 16 LS Contribution 263.45 15.07 3.97 3.97 Total: -1.00 -30.88 263.45 -6.53 -37.41 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -3.54 Total: 6.51 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.26 Total: 1.23 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.13 Total: -39.62 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.80 Total: -26.13 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.88 -6.53 -37.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067364.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.541 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds