Wall clock time and date at job start Sun Mar 29 2020 21:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00281 * 2 1 4 4 H 1.48503 * 109.47150 * 265.09759 * 3 2 1 5 5 H 1.48497 * 109.47018 * 25.09278 * 3 2 1 6 6 H 1.48491 * 109.47226 * 145.09411 * 3 2 1 7 7 C 1.38818 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99537 * 204.60547 * 7 2 1 9 9 N 1.36932 * 120.00031 * 24.60262 * 7 2 1 10 10 C 1.46499 * 120.00023 * 189.45248 * 9 7 2 11 11 C 1.52995 * 109.47080 * 90.00407 * 10 9 7 12 12 C 1.53005 * 109.47161 * 180.02562 * 11 10 9 13 13 C 1.52999 * 117.49947 * 243.74483 * 12 11 10 14 14 C 1.52997 * 117.49781 * 175.08564 * 12 11 10 15 15 C 1.46499 * 119.99987 * 9.46014 * 9 7 2 16 16 C 1.50703 * 109.46860 * 269.28663 * 15 9 7 17 17 O 1.20829 * 119.99964 * 359.97438 * 16 15 9 18 18 O 1.34225 * 120.00040 * 180.02562 * 16 15 9 19 19 H 0.97007 * 119.99909 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.46952 * 330.00468 * 10 9 7 21 21 H 1.08997 * 109.47141 * 210.00510 * 10 9 7 22 22 H 1.09005 * 109.47080 * 299.99840 * 11 10 9 23 23 H 1.08996 * 109.47341 * 59.99863 * 11 10 9 24 24 H 1.09001 * 115.54571 * 29.41883 * 12 11 10 25 25 H 1.09005 * 117.49301 * 0.02562 * 13 12 11 26 26 H 1.08998 * 117.49626 * 145.01857 * 13 12 11 27 27 H 1.09002 * 117.49963 * 214.97867 * 14 12 11 28 28 H 1.09007 * 117.50269 * 0.02562 * 14 12 11 29 29 H 1.09004 * 109.47599 * 29.28304 * 15 9 7 30 30 H 1.09005 * 109.47144 * 149.28710 * 15 9 7 31 31 H 0.96701 * 117.00213 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6014 1.9865 -1.3950 5 1 1.3997 2.6803 0.5937 6 1 3.4920 1.4722 0.8011 7 6 2.0102 -1.2022 -0.0005 8 1 3.0167 -1.2448 0.3889 9 7 1.4187 -2.3340 -0.4947 10 6 2.0618 -3.6372 -0.3095 11 6 1.5768 -4.2638 0.9993 12 6 2.2489 -5.6246 1.1931 13 6 1.3489 -6.8619 1.2042 14 6 1.9819 -6.3637 2.5058 15 6 0.1430 -2.2417 -1.2089 16 6 -0.9927 -2.3978 -0.2306 17 8 -0.7602 -2.5690 0.9426 18 8 -2.2625 -2.3475 -0.6628 19 1 -0.4850 0.8401 -0.0004 20 1 3.1433 -3.5065 -0.2708 21 1 1.8045 -4.2911 -1.1427 22 1 1.8342 -3.6099 1.8325 23 1 0.4954 -4.3945 0.9607 24 1 3.2397 -5.7268 0.7505 25 1 0.2780 -6.7064 1.0729 26 1 1.7478 -7.7782 0.7691 27 1 2.7969 -6.9527 2.9266 28 1 1.3271 -5.8808 3.2313 29 1 0.0699 -1.2705 -1.6984 30 1 0.0881 -3.0313 -1.9583 31 1 -2.9570 -2.4523 0.0019 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067364.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:10 Heat of formation + Delta-G solvation = -67.102025 kcal Electronic energy + Delta-G solvation = -14777.688868 eV Core-core repulsion = 12252.914424 eV Total energy + Delta-G solvation = -2524.774444 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.54055 -38.64940 -37.29840 -36.16394 -33.64107 -31.01633 -28.89223 -25.91617 -23.32075 -23.11550 -21.76234 -21.17287 -18.78171 -18.42620 -17.15811 -16.93751 -16.29400 -15.98819 -15.48612 -15.39828 -14.79369 -14.13083 -13.70771 -13.29913 -13.11876 -12.87021 -12.48650 -12.37673 -12.23373 -12.16115 -11.98217 -11.74138 -11.59338 -11.22129 -10.89955 -10.66503 -10.48745 -9.02334 -7.96410 -5.22942 1.48939 1.50690 1.58327 2.08876 2.49908 2.83332 2.97124 3.26212 3.54202 3.98622 4.11768 4.14601 4.47080 4.62625 4.63956 4.78215 4.84663 4.95828 5.06862 5.18662 5.21101 5.28493 5.32794 5.41447 5.63367 5.68971 6.20120 6.22676 7.04313 7.64911 7.85344 8.18077 9.13495 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029679 B = 0.010695 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.214108 B = 2617.507171 C = 3227.829444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.055 4.055 3 Si 0.971 3.029 4 H -0.279 1.279 5 H -0.303 1.303 6 H -0.275 1.275 7 C -0.255 4.255 8 H 0.080 0.920 9 N -0.586 5.586 10 C 0.146 3.854 11 C -0.091 4.091 12 C -0.157 4.157 13 C -0.171 4.171 14 C -0.186 4.186 15 C 0.186 3.814 16 C 0.480 3.520 17 O -0.550 6.550 18 O -0.537 6.537 19 H 0.249 0.751 20 H 0.059 0.941 21 H 0.067 0.933 22 H 0.023 0.977 23 H 0.040 0.960 24 H 0.117 0.883 25 H 0.079 0.921 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.549 -9.714 -2.110 10.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.249 4.249 3 Si 0.800 3.200 4 H -0.206 1.206 5 H -0.231 1.231 6 H -0.201 1.201 7 C -0.384 4.384 8 H 0.098 0.902 9 N -0.306 5.306 10 C 0.021 3.979 11 C -0.131 4.131 12 C -0.175 4.175 13 C -0.208 4.208 14 C -0.223 4.223 15 C 0.056 3.944 16 C 0.322 3.678 17 O -0.439 6.439 18 O -0.348 6.348 19 H 0.058 0.942 20 H 0.078 0.922 21 H 0.086 0.914 22 H 0.042 0.958 23 H 0.059 0.941 24 H 0.135 0.865 25 H 0.097 0.903 26 H 0.134 0.866 27 H 0.130 0.870 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 1.876 -9.582 -2.093 9.986 hybrid contribution -0.577 1.229 1.094 1.743 sum 1.299 -8.353 -0.999 8.512 Atomic orbital electron populations 1.69980 1.06312 1.25613 1.55925 1.25460 0.95981 1.01188 1.02242 0.85213 0.77654 0.79321 0.77813 1.20553 1.23067 1.20061 1.19587 0.96848 0.86423 1.35588 0.90241 1.44464 1.19497 1.03669 1.62953 1.21147 0.96626 0.84929 0.95196 1.21602 0.98798 0.93598 0.99114 1.22390 1.00749 0.92372 1.02039 1.23047 0.98443 0.98196 1.01121 1.22991 1.03912 1.04277 0.91082 1.20427 0.80865 1.02386 0.90680 1.25443 0.82996 0.68786 0.90615 1.90477 1.84926 1.47565 1.20954 1.84565 1.17976 1.85966 1.46324 0.94157 0.92230 0.91425 0.95807 0.94112 0.86469 0.90261 0.86646 0.86964 0.90747 0.88996 0.89513 0.74441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.61 9.00 21.65 0.19 -53.42 16 2 C -0.05 -3.00 4.89 84.86 0.42 -2.58 16 3 Si 0.97 44.91 29.62 68.60 2.03 46.94 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.25 -13.76 9.70 84.04 0.82 -12.94 16 8 H 0.08 4.21 7.92 -2.91 -0.02 4.19 16 9 N -0.59 -28.50 2.09 -706.34 -1.48 -29.98 16 10 C 0.15 5.81 5.67 86.38 0.49 6.30 16 11 C -0.09 -3.67 5.07 30.59 0.16 -3.51 16 12 C -0.16 -4.73 5.73 -10.79 -0.06 -4.79 16 13 C -0.17 -4.42 10.18 30.62 0.31 -4.11 16 14 C -0.19 -5.04 10.25 30.62 0.31 -4.72 16 15 C 0.19 8.65 5.58 85.63 0.48 9.12 16 16 C 0.48 23.25 6.31 71.24 0.45 23.70 16 17 O -0.55 -30.35 14.42 21.95 0.32 -30.03 16 18 O -0.54 -21.84 13.42 -51.37 -0.69 -22.53 16 19 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 20 H 0.06 2.25 8.03 -2.39 -0.02 2.23 16 21 H 0.07 2.32 7.90 -2.39 -0.02 2.30 16 22 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 23 H 0.04 1.82 6.04 -2.39 -0.01 1.80 16 24 H 0.12 3.09 8.08 -2.39 -0.02 3.07 16 25 H 0.08 2.22 8.03 -2.38 -0.02 2.20 16 26 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.09 4.68 6.30 -2.38 -0.02 4.67 16 30 H 0.09 3.33 7.90 -2.38 -0.02 3.31 16 31 H 0.40 12.89 9.10 -74.06 -0.67 12.22 16 Total: -1.00 -66.36 263.45 4.19 -62.17 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.45 Total: 20.37 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 3.37 Total: 6.47 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -1.28 Total: -83.40 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.37 Total: -52.56 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -66.36 4.19 -62.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067364.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.929 kcal (2) G-P(sol) polarization free energy of solvation -66.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds