Wall clock time and date at job start Sun Mar 29 2020 22:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47241 * 2 1 4 4 H 1.09000 * 109.46866 * 305.64043 * 3 2 1 5 5 C 1.50699 * 109.47068 * 185.64261 * 3 2 1 6 6 H 1.08004 * 120.00239 * 240.00279 * 5 3 2 7 7 C 1.37882 * 119.99773 * 59.99750 * 5 3 2 8 8 N 1.31508 * 120.00199 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99565 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47011 * 60.00374 * 9 7 5 11 11 H 1.48500 * 109.46602 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47379 * 299.99742 * 9 7 5 13 13 N 1.46900 * 109.47543 * 65.64321 * 3 2 1 14 14 C 1.46893 * 111.00337 * 204.01582 * 13 3 2 15 15 H 1.09000 * 110.32871 * 328.78117 * 14 13 3 16 16 C 1.54485 * 110.37168 * 206.53821 * 14 13 3 17 17 C 1.54576 * 102.14787 * 225.81668 * 16 14 13 18 18 O 1.45833 * 104.55142 * 26.78570 * 17 16 14 19 19 C 1.34217 * 109.82044 * 329.57259 * 18 17 16 20 20 O 1.20827 * 125.03215 * 200.73720 * 19 18 17 21 21 H 1.09000 * 109.47510 * 174.24415 * 1 2 3 22 22 H 1.09001 * 109.47549 * 294.24948 * 1 2 3 23 23 H 1.09008 * 109.46932 * 54.24648 * 1 2 3 24 24 H 1.09000 * 109.47263 * 239.99609 * 2 1 3 25 25 H 1.09001 * 109.46719 * 119.99821 * 2 1 3 26 26 H 0.96998 * 119.99923 * 180.02562 * 8 7 5 27 27 H 1.00903 * 110.99562 * 327.96754 * 13 3 2 28 28 H 1.09006 * 110.87179 * 107.65341 * 16 14 13 29 29 H 1.09003 * 110.86890 * 343.98182 * 16 14 13 30 30 H 1.08998 * 110.43585 * 145.58668 * 17 16 14 31 31 H 1.08998 * 110.44144 * 267.98492 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9846 -0.8352 5 6 3.5405 1.4447 -0.1397 6 1 4.1541 1.8863 0.6317 7 6 4.1301 0.8828 -1.2523 8 7 3.3831 0.3455 -2.1917 9 14 5.9902 0.8850 -1.4250 10 1 6.5938 0.1459 -0.2873 11 1 6.3695 0.2264 -2.7008 12 1 6.4858 2.2849 -1.4248 13 7 1.6648 2.0946 1.2617 14 6 1.6070 3.5538 1.1032 15 1 2.3294 3.8825 0.3561 16 6 1.8754 4.2526 2.4546 17 6 0.7589 5.3207 2.4960 18 8 -0.3112 4.7642 1.6762 19 6 0.2099 3.9866 0.7144 20 8 -0.3525 3.6797 -0.3100 21 1 -0.3634 -1.0225 -0.1031 22 1 -0.3634 0.4221 0.9370 23 1 -0.3633 0.6005 -0.8341 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 3.7979 -0.0501 -2.9742 27 1 0.7887 1.7336 1.6087 28 1 2.8602 4.7199 2.4614 29 1 1.7720 3.5505 3.2821 30 1 0.4150 5.4724 3.5191 31 1 1.1144 6.2596 2.0716 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846996947.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:41 Heat of formation + Delta-G solvation = -86.358951 kcal Electronic energy + Delta-G solvation = -14814.425383 eV Core-core repulsion = 12288.815896 eV Total energy + Delta-G solvation = -2525.609487 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.62875 -37.08317 -36.23364 -33.12554 -31.66035 -29.92377 -27.10474 -25.54165 -22.75963 -22.07958 -20.48951 -19.65627 -16.97352 -16.63972 -16.29844 -15.84430 -14.84682 -14.24889 -13.92160 -13.51252 -13.34034 -12.82514 -12.63033 -11.95144 -11.92661 -11.60520 -11.16437 -11.02535 -10.80119 -10.67532 -10.36529 -10.16471 -10.00012 -9.69704 -9.62891 -9.11976 -8.37931 -7.44322 -5.98728 -4.04704 2.41647 3.31813 3.36987 3.38922 3.50816 4.34058 4.41900 4.67445 4.78320 5.08053 5.29387 5.41558 5.53686 5.73241 6.07970 6.17713 6.20169 6.25985 6.47060 6.88163 6.98979 7.07910 7.13344 7.42408 7.69609 7.81541 7.87039 8.10989 8.31278 8.57440 9.01623 9.59921 11.06661 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.032633 B = 0.010178 C = 0.008681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.811953 B = 2750.349445 C = 3224.554321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.211 3.789 4 H 0.017 0.983 5 C -0.501 4.501 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.891 5.891 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.651 5.651 14 C 0.038 3.962 15 H 0.124 0.876 16 C -0.146 4.146 17 C 0.052 3.948 18 O -0.360 6.360 19 C 0.445 3.555 20 O -0.451 6.451 21 H 0.038 0.962 22 H 0.031 0.969 23 H 0.047 0.953 24 H 0.102 0.898 25 H 0.041 0.959 26 H 0.261 0.739 27 H 0.322 0.678 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 6.727 8.544 11.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C 0.104 3.896 4 H 0.035 0.965 5 C -0.540 4.540 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.530 5.530 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.284 5.284 14 C -0.075 4.075 15 H 0.142 0.858 16 C -0.184 4.184 17 C -0.023 4.023 18 O -0.277 6.277 19 C 0.283 3.717 20 O -0.332 6.332 21 H 0.057 0.943 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.120 0.880 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.140 0.860 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.429 6.525 8.129 10.704 hybrid contribution 0.259 0.043 -0.625 0.678 sum -2.170 6.568 7.505 10.207 Atomic orbital electron populations 1.21884 0.99394 0.99777 0.99763 1.21748 0.91388 0.99948 1.03144 1.19378 0.95703 0.90450 0.84053 0.96520 1.21119 0.90890 1.37489 1.04504 0.91985 1.24969 0.98178 0.95519 0.95767 1.69871 1.34850 1.38872 1.09456 0.86582 0.85573 0.78125 0.77194 1.20280 1.21427 1.20420 1.61112 1.34625 0.98862 1.33753 1.22918 0.93252 0.93268 0.98052 0.85812 1.23025 0.99091 0.97564 0.98742 1.24102 0.86062 0.96755 0.95360 1.87004 1.36781 1.61088 1.42801 1.24788 0.89853 0.75867 0.81188 1.90707 1.67857 1.53642 1.20997 0.94305 0.95023 0.93359 0.88023 0.94051 0.92882 0.85952 0.88664 0.88699 0.87746 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.64 37.16 0.36 -2.78 16 2 C -0.12 -2.97 5.37 -26.73 -0.14 -3.11 16 3 C 0.21 5.25 1.89 -68.87 -0.13 5.12 16 4 H 0.02 0.48 7.52 -51.93 -0.39 0.09 16 5 C -0.50 -13.49 8.49 -34.44 -0.29 -13.79 16 6 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 7 C 0.06 1.56 5.29 -17.82 -0.09 1.46 16 8 N -0.89 -25.41 11.29 55.43 0.63 -24.78 16 9 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.65 -13.44 6.06 -101.03 -0.61 -14.05 16 14 C 0.04 0.68 3.07 -67.78 -0.21 0.48 16 15 H 0.12 2.43 7.64 -51.93 -0.40 2.04 16 16 C -0.15 -1.85 6.95 -25.12 -0.17 -2.02 16 17 C 0.05 0.57 7.90 37.99 0.30 0.87 16 18 O -0.36 -5.79 11.07 -38.88 -0.43 -6.22 16 19 C 0.45 8.50 7.89 36.32 0.29 8.78 16 20 O -0.45 -10.38 17.64 -18.41 -0.32 -10.70 16 21 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.03 0.60 6.65 -51.93 -0.35 0.25 16 23 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 24 H 0.10 2.73 5.94 -51.93 -0.31 2.42 16 25 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.32 6.35 6.29 -39.29 -0.25 6.10 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.09 1.17 8.02 -51.93 -0.42 0.76 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 260.44 15.07 3.92 3.92 Total: -1.00 -30.59 260.44 -6.12 -36.71 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.19 Total: 4.02 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -0.10 Total: -4.99 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.01 Total: -38.84 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.75 Total: -16.93 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.59 -6.12 -36.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846996947.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.649 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds